- San Joaquin River
San Joaquin River RiverThe river in the San Joaquin Valley. Note figures on the sandbar for scale. Name origin: c. 1805-1808 by Gabriel Moraga for Saint Joachim, father of Mary, the mother of Jesus Country United States State California Tributaries - left Fresno Slough - right Merced River, Tuolumne River, Stanislaus River, Mokelumne River Cities Fresno, Modesto, Stockton Source Thousand Island Lake - location Ansel Adams Wilderness, Sierra Nevada - elevation 9,839 ft (2,999 m) - coordinates  Mouth Suisun Bay - location Antioch, Contra Costa/Solano Counties - elevation 0 ft (0 m) - coordinates  Length 366 mi (589 km)  Basin 31,800 sq mi (82,362 km2)  Discharge for Vernalis, 78 miles (126 km) from the mouth - average 5,110 cu ft/s (145 m3/s)  - max 325,000 cu ft/s (9,203 m3/s)  - min 30 cu ft/s (1 m3/s)
The San Joaquin River ( / /) is the largest river of Central California in the United States. At over 365 miles (587 km) long, the river starts in the high Sierra Nevada, and flows through a rich agricultural region known as the San Joaquin Valley before reaching Suisun Bay, San Francisco Bay, and the Pacific Ocean. An important source of irrigation water as well as a wildlife corridor, the San Joaquin is among the most heavily dammed and diverted of California's rivers.
People have inhabited the San Joaquin Valley for more than 8,000 years, and it was long one of the major population centers of pre-Columbian California. Starting in the late 18th century, successive waves of explorers then settlers, mainly Spanish and American, emigrated to the San Joaquin basin, first exploiting then driving out the indigenous tribes. The newcomers quickly appropriated the rich natural and hydrologic resources of the watershed for use in farms and cities, but found themselves plagued by flood and drought. Because of the uniform topography of the San Joaquin Valley, floods once transformed much of the lower river into a huge inland sea.
In the 20th century, many levees and dams were built on the San Joaquin and all of its major tributaries. These engineering works changed the fluctuating nature of the river forever, and cut off the Tulare Basin from the rest of the San Joaquin watershed. Once habitat for thousands of spawning salmon and millions of migratory birds, today the river is subject to tremendous water-supply, navigation and regulation works by various federal agencies, which have dramatically reduced the flow of the river since the 20th century.
- 1 Name
- 2 Course
- 3 Geology
- 4 History
- 5 Dams, diversions and engineering
- 6 Ecology
- 7 Watershed
- 8 See also
- 9 Notes
- 10 References
- 11 Works cited
- 12 External links
Many different names have been given to the San Joaquin over time, and there were even times when different sections of the river were known by different names. The present name of the river dates back to between 1805 and 1808, when Spanish explorer Gabriel Moraga was surveying east from Mission San José in order to find potential mission sites. Moraga happened upon a tributary (it is unknown which one) of the river, and named it for Saint Joachim, husband of Saint Anne and father of Mary, the mother of Jesus. That name was later applied to the entirety of the river, and was in common use by 1810.
In 1826, Jedediah Smith wrote in his journals that an unknown group of Native Americans called the river the Peticutry, a name which is listed as an official variant in the U.S. Geological Survey (USGS) Geographic Names Information System. Other names include Rio de San Francisco, probably by Father Juan Crespí in 1772, and Rio San Juan Bautista, the origin of which is unknown.
The river officially starts in the south-central Sierra Nevada at the confluence of two major affluents: the Middle Fork, rising out of Thousand Island Lake at almost 10,000 feet (3,000 m) above sea level, and the smaller North Fork, beginning at a small unnamed pond just south of Mount Lyell. The Middle Fork is usually considered part of the main stem. From the mountainous alpine headwaters, the San Joaquin flows generally south into the foothills of the Sierra, passing through four hydroelectric dams. It eventually emerges from the foothills at what was once the town of Millerton, the location of Friant Dam since 1944, which forms Millerton Lake.
Below Friant Dam, the San Joaquin flows west-southwest out into the San Joaquin Valley – the southern part of the Great Central Valley – passing north of Fresno. With most of its water diverted into aqueducts, the river frequently runs dry in the 60 miles (97 km) between here and Mendota, where it is replenished by the Delta-Mendota Canal and intermittent flows from Fresno Slough, fed by the Kings River. From Mendota, the San Joaquin swings northwest, passing through many different channels, some natural and some man-made. Northeast of Dos Palos, it is joined by the Fresno and Chowchilla Rivers. Fifty miles (80 km) downstream, the Merced River empties into the San Joaquin.
The majority of the river flows through quiet agricultural bottomlands, and as a result its meandering course manages to avoid most of the urban areas and cities in the San Joaquin Valley. About 11 miles (18 km) west of Modesto, the San Joaquin meets its largest tributary, the Tuolumne. Near Vernalis, it is joined by another major tributary, the Stanislaus River. The river passes between Manteca and Tracy, where a pair of distributaries – the Old River and Middle River – split off from the main stem just above the Sacramento-San Joaquin Delta, a huge inverted river delta formed by sediment deposits of the Sacramento and San Joaquin Rivers.
About 40 miles (64 km) from the mouth, the river draws abreast to the western flank of Stockton, one of the basin's largest cities. From here to the mouth, the river is dredged as part of a navigation project, the Stockton Deep Water Ship Channel. Past the head of tide, amid the many islands of the delta, the San Joaquin is joined by two more tributaries: the Calaveras River and the larger Mokelumne. The river grows to almost 5,000 feet (1,500 m) wide before ending at its confluence with the Sacramento River, in Antioch, forming the head of Suisun Bay. The combined waters from the two rivers then flow west through the Carquinez Strait and San Francisco Bay into the Pacific.
First row indicates discharge in cfs; second row in m3/s 5010 6860 7220 7100 7560 6280 2570 1450 1760 2280 2260 3430 142 194 204.5 201 214 178 73 41 50 64.5 64 97
In a geologic context, the San Joaquin can be divided into two major segments. The upper 97 miles (156 km) above Friant Dam in the Sierra is characterized as a steep-gradient, rocky mountain stream. Over millions of years, the upper San Joaquin, as well as the upper reaches of most of its tributaries, have eroded enormous amounts of rock and sediment from the mountains. Most of the Sierras are underlain by granitic igneous and metamorphic rock dating back to the Mesozoic Era (250-65.5 MYA); in addition many of the San Joaquin's tributaries flow across a foothills region of metamorphosed volcanic rock more famously known as the Mother Lode Gold Belt.
The 268-mile (431 km) lower part of the river, in sharp contrast, is a meandering stream flowing over Cenozoic alluvial deposits (65.5 MYA-present), which together comprise the flat floor of the Central Valley. The tremendous volume of sediments that underlie the lower San Joaquin River ranges from 6 to 9.5 miles (9.7 to 15.3 km) deep, with distance to bedrock generally increasing in a northerly direction. Prior to the uplift of the California Coast Ranges, more than 20,000 feet (6,100 m) of sediments were deposited at the foot of the Sierras by tidal activity, and the ancestral San Joaquin and its tributaries flowed west over this alluvial plain to the sea, dumping their own sediments onto the marine deposits. Compressional forces along the boundary of the North American and Pacific Plates between 2-4 MYA resulted in the uplift of the Coast Ranges, creating an enclosed basin today known as the Central Valley and resulted in the San Joaquin's present path to the sea.
Because of its highly permeable nature, the San Joaquin River's valley is underlain by one of the largest aquifers in the Western United States. The aquifer underlying the San Joaquin River and Tulare Basin is estimated to hold nearly 686,000,000 acre feet (846 km3) of water, of which about half can be pumped economically or is clean enough for human use.[n 1] The aquifer receives in excess of 1,600,000 acre feet (2.0 km3) of inflow per year, mostly from precipitation and irrigation water seepage. Concentration of chloride and other minerals generally increases from east to west across the basin.
Archaeological finds near the southern end of the San Joaquin Valley suggested that man first arrived in the region as early as 12,000 but no later than 8,000 years ago. The two major ethnic groups were the Miwok people, who inhabited the northern end of the San Joaquin Valley and the Sacramento-San Joaquin Delta region, and the Yokut tribes, scattered around the more arid southern portion of the basin. During these pre-European times, the San Joaquin River flowed through rich grasslands and sprawling marshes, flooding every few years and transforming much of the valley into lakes. At the southern end of the valley lay the vast Tulare Lake, formerly the largest freshwater lake in the western United States, which connected with the San Joaquin through a series of marshes and sloughs. The rich vegetation and wildlife surrounding these bodies of water made the San Joaquin Valley a favored home as well as a stopping-off place for other nomadic peoples. The native people, mostly hunter-gatherers, lived off this land of abundance; during the 18th century, the population of the San Joaquin Valley was estimated at more than 69,000, representing one of the greatest concentrations of native people anywhere in North America.
The Yokut, who comprised most of the indigenous in the San Joaquin basin, are believed to have lived along streams coming out of the foothills of the Sierra, spanning a region from the Chowchilla River all the way south to the Kern River, including reaches of the upper San Joaquin River. Territories east of the foothills were occupied by the Chumash and Paiute, while the marshlands to the west were inhabited by various nomadic peoples, and probably had fewer permanent residents although it was a favored fishing and hunting spot. In contrast, the Miwok occupied land deeper within the Sierra Nevada stretching north from the Merced River to the Mokelumne or the American, a tributary of the Sacramento, and west to the Delta region. Most of the Miwok people in the watershed were part of the appropriately named Sierra Miwok group.
A majority of the people along the San Joaquin River and its tributaries lived in small bands or tribes, which had no distinguishing names. Villages were small and usually the size of camps, rarely numbering more than a few hundred inhabitants. The Miwok, for example, rarely traveled more than a few miles from their home villages, and as such the inhabitants of one village would not know much of the surrounding country beyond the neighboring villages. The staple food for San Joaquin Valley inhabitants was the acorn, which when ground, could be made into various foods such as cakes. Grinding the acorns was a simple process where they crushed the nuts using rocks in natural granite depressions. Many of the surviving examples of acorn milling areas can still be found in the foothills, especially around the Kaweah River area.
Spanish and Mexican influence
The first recorded non-indigenous person to see the San Joaquin Valley was Don Pedro Fages in 1772. This is for certain, but several dramatically different accounts have been given for how and where he arrived. Fages may have started from Mission San Luis Obispo de Tolosa, apparently chasing deserters from the Spanish army, and traveled east then north over the Tehachapi Mountains through Tejón Pass, which today carries Interstate 5 into the valley. After crossing the mountains, he came upon the shore of Buena Vista Lake at the southern end of the San Joaquin Valley, and gave the name Buena Vista ("beautiful view") to the pass and a nearby Native American village. However, Fages did not venture farther north, and thus did not see the San Joaquin River.
In contrast, the second story is confusing in its sheer geographic difference from the first, yet in its identical time frame. In this account, Fages, accompanied by Father Juan Crespí, reached Mount Diablo near Suisun Bay on March 30, 1772 and there gazed upon the merging courses of the Sacramento, San Joaquin and Mokelumne Rivers. Another narrative does not mention Fages' name, but does say that Crespí was the one who reached Suisun Bay in 1772. During this visit, Crespí called the San Joaquin River "El Rio de San Francisco", a name that was not used widely due to the river's remoteness but persisted until the early 19th century.
The San Joaquin River region remained largely unknown except for the fact of its existence until 1806, when Spanish explorer Gabriel Moraga led the first of several subsequent expeditions into the Central Valley, in order to find potential mission sites. Moraga started out from Mission San Juan Bautista, in present-day San Benito County, on September 21 of that year and traveled east into the San Joaquin Valley. The group skirted the western foothills of the Sierra and christened many placenames that remain in use today. In 1807 and 1808, Moraga set out again to the San Joaquin Valley. It was during one of these expeditions that he gave the river its present name, after St. Joachim. He also gave names to many tributaries of the river, such as the Merced River (El Río de Nuestra Señora de Merced, "River of our Lady of Mercy".
Although relations between the Spanish and the Native Americans in the earlier expeditions to the valley were initially friendly, the indigenous began to grow accustomed to, and thus started taking advantage of, the Spanish that later came to the San Joaquin River region. As early as the 1807 Moraga expedition, it was reported that some natives were hostile and attempting to steal their horses. Indeed, when the natives began to rustle cattle and horses for food, the Spanish retaliated by burning camps and villages, and forcibly taking native children for labor work at the various missions. Such conflict created enormous cultural loss, and violence continually escalated between the two sides, with no apparent end in sight.
During the early 19th century, the Spanish military frequently raided the San Joaquin Valley, taking hostage hundreds of native Yokuts and Miwoks and forcing them to nearby missions – San Juan Bautista, San José, San Francisco de Asís, for example. Military violence and disease caused the extermination of much of the remaining valley population, including those in a series of 24 villages along the lower San Joaquin River described by Moraga. Those natives that lived in the foothills and the higher mountains of the Sierra remained undisturbed for the most part, and fought back against the Spanish while sheltering their valley counterparts.
However, the greater military power of the Europeans resulted in the indigenous getting pushed further and further back from their native lands; this did not change when California became part of Mexico in 1821, despite the fact that the new government secularized the Spanish missions and resultantly freed many enslaved indigenous people. Additionally, from 1820, El Camino Viejo a route between Los Angeles and San Francisco Bay along the west side the the San Joaquin Valley began, which brought settlements into the valley. During Mexican rule, the mission lands in the San Joaquin Valley were subdivided to wealthy landowners (rancheros) and caused even more conflicts between the Mexicans and the Native Americans. A famous leader of the natives was the Yokut Estanislao, who led revolts against the Mexicans in the late 1820s until finally defeated in 1829 on the Stanislaus River, which bears his name today.
Early American era
The first American known to see the San Joaquin River was likely Jedediah Smith, a renowned mountain man, fur trapper and explorer. In 1826, Smith arrived in Mission San Gabriel Arcángel, California, when the region was under control by the Mexican government. As this was in violation of a law which prevented foreigners from entering California and he could have been arrested for spying, he traveled north into the San Joaquin Valley, searching for populations of beaver. Smith noted the fertility and natural beauty of the area, and the apparent peace of the Native Americans living in the villages he passed by. His expedition then turned east in an attempt to cross the Sierra Nevada. They tried to summit the range by way of both the Kings River and the American River (a tributary of the Sacramento), but it was early spring and the snow was too deep. Finally, they crossed the mountains along the Stanislaus River canyon, becoming the first recorded whites to cross the Sierra Nevada on foot. It is still disputed over whether Smith's party discovered gold on the San Joaquin or one of its tributaries. Although some of his men confirmed it, Smith did not make any mention of the precious metal in his journal.
In the early 1830s, a few fur trappers from the Pacific Northwest exploring southwards into the San Joaquin Valley arrived just in time to be greeted with a sight of horror. An epidemic of smallpox and malaria brought unintentionally by the Europeans had swept down the San Joaquin River corridor during the summer of 1833, killing in a single stroke between 50 and 75 percent of the entire native population in the valley. The outbreak did not vanish; it continued for year after year with diminishing acuteness until about 50,000-60,000 indigenous lay dead. Explorer Kit Carson noted in 1839 that "…cholera or some other fearful scourge broke out among them and raged with such fearful fatality that they were unable either to bury or burn their dead, and the air was filled with the stench of their decaying bodies."
During the time Mexico was in control of California, the San Joaquin River region was only sparsely populated, and used almost exclusively for cattle ranching. However, when California won independence from Mexico in 1846, becoming part of the United States the following month, a flood of American settlers descended upon the valley. Just an year before, Benjamin Davis Wilson had "drove a herd of cattle from his Riverside rancho through the San Joaquin Valley to Stockton and reported seeing not a single white man". But after the Americans took over, emigrants began trickling in increased numbers, establishing the towns of Kingston City, Millerton, and Fresno City. The newcomers also included a group of Mormons led by Samuel Brannan who established a settlement at the confluence of the San Joaquin and the Stanislaus, called New Hope.
The real influx came in 1848, when a gold strike on the American set off the California Gold Rush. Within one year, the population of the San Joaquin Valley increased by more than 80,000. The city of Stockton, on the lower San Joaquin, quickly grew from a sleepy backwater to a thriving trading center, the stopping-off point for miners headed to the gold fields in the foothills of the Sierra. Rough ways such as the Millerton Road which later became the Stockton - Los Angeles Road quickly extended the length of the valley, some following old cattle routes and Native American trails, and were served by mule teams and covered wagons. Riverboat navigation quickly became an important transportation link on the San Joaquin River, and during the "June Rise", as boat operators called the San Joaquin's annual high water levels during snowmelt, large craft could make it as far upstream as Fresno. During the peak years of the gold rush, the river in the Stockton area was reportedly crowded with hundreds of abandoned oceangoing craft, whose crew had deserted for the gold fields. The multitude of idle ships was such a blockade that at several occasions they were burned just to clear a way for riverboat traffic.
Rise of irrigation
Although the gold rush attracted tens of thousands of newcomers to the San Joaquin River area, deposits of the precious mineral petered out within a few years, especially on the upper reaches of the San Joaquin and its tributaries which were only suitable for placer mining. Many of these people settled in the San Joaquin Valley, most in the existing towns such as Stockton, Fresno and Bakersfield but some establishing new settlements. These included San Joaquin City, near the confluence of the San Joaquin with the Stanislaus, probably the largest of these post-gold-rush boomtowns. Established in 1851, the town maintained considerable size until 1880, when trade competition from nearby Stockton caused it to diminish. Another notable but much smaller settlement was Las Juntas, near present-day Mendota. This was a haven for criminals and fugitives, and was frequented by the infamous bandits Joaquín Murrieta and Tiburcio Vásquez.
It was in the mid-1860s that the San Joaquin River and its surrounds underwent the greatest change they had seen in human history: the introduction of irrigated agriculture. As early as 1863, small irrigation canals were built in the Centerville area, southeast of Fresno, but were destroyed in subsequent floods. The vulnerability of the small local infrastructure led to the establishment of irrigation districts, which were formed to construct and maintain canals in certain areas of the valley. One of the first was the Robla Canal Company in the Merced River area, which went into operation in March 1876, but was soon surpassed by the Farmers Canal Company. The district built a diversion dam on the Merced, sending its water into a pair of canals still in use today.
One of the most powerful early irrigation empires was the Kern County Land and Water Company, established by James Ben Ali Haggin, a wealthy land speculator, in 1873, and soon supplying over 400,000 acres (1,600 km2) through their canal system. However, Haggin soon ran into conflicts with other landowners over riparian water rights, as the larger districts, including his, had more financial reserves and engineering expertise, and were the first to build dams and diversions on a large scale. This resulted in the drying out of streams and rivers before they reached downstream users and sparked conflict over how much water could be allotted to whom. In Haggin's case, his company ran into problems with the Miller & Lux Corporation, run by Henry Miller and Charles Lux, who owned more than 1,000,000 acres (4,000 km2) throughout the San Joaquin Valley, Tulare Basin, and other regions of California. The court battle that resulted would change water laws and rights in the San Joaquin River valley forever, and ended up promoting large-scale agribusiness over small farmers.
Miller and Lux were not any newer to the San Joaquin Valley than had been Haggin, but were the driving influence on valley agribusiness until well into the early 20th century. The corporation had begun acquiring land in the valley in 1858, eventually holding sway over an enormous swath reaching from the Kern River in the south to the Chowchilla River in the north. Much of the land that Miller and Lux acquired was swamp and marsh, which was considered virtually worthless. However, with their huge capital, they could afford to drain thousands of acres of it, beginning an enormous environmental change that eventually resulted in the loss of over 95 percent of the wetlands adjoining the San Joaquin River and Tulare Basin.
Henry Miller exercised enormous political power in the state, and most San Joaquin Valley inhabitants either were avid supporters of him or despised him. When Miller died in 1916, his company owned 900,000 acres (3,600 km2) in the San Joaquin Valley alone with hundreds of miles of well-developed, maintained irrigation canals. As said by Tom Mott, the son of Miller and Lux' irrigation superintendent, "Miller realized you couldn't do anything with the land unless you had the water to go with it. Perhaps more than any other person, Miller had more of a lasting impact on the San Joaquin River than any other individual."
Even as early as the 20th century, so much water was being diverted off the San Joaquin River and its tributaries that the river was no longer suitable for navigational purposes. As a result, commercial navigation began a decline starting in the late 19th century and was completely gone by 1911. With over 350,000 acres (1,400 km2) under irrigation along the river by 1900 – this figure has only grown hugely since then – the river and its tributaries became much narrower, siltier and shallower, with large consequences for the natural environment, for sustainability of water supplies in its valley, and also huge changes for water politics in the state. The San Joaquin and its tributaries seemed to give rise to just about every single possible argument over water, including such cases as "When is a river not a river?" referring to the difference between a slough and a marsh. It has been said that fights over the river have caused "some of the most bitter and longest running lawsuits ever to clog the courts. Arguably, it is the most litigated river in America."
Dams, diversions and engineering
Stockton Ship Channel
Once, before agricultural development of its valley, the San Joaquin was navigable by steamboats as far upstream as Fresno, but diversions have slowed and shallowed the river. In addition, this has caused the river to drop large amounts of silt that formerly washed out to sea in its bed, further reducing the depth. In the late 19th century, the city of Stockton, once an important seaport for the San Joaquin Valley, found itself increasingly landlocked because the San Joaquin River, its main connection to the sea, was rapidly silting up. The early 20th century saw proposals to maintain a minimum depth in the lower river by dredging, but these were interrupted by the onset of World War I. In 1925 the city put forth a $1.3 million bond for dredging the lower San Joaquin from its mouth to the Port of Stockton – a distance of 41 miles (66 km) by river.
In 1926, Stockton pooled its finances with the federal and state governments for a total of $8.2 million. Construction on the channel, which included widening and deepening the riverbed and cutting off meanders and oxbows, began in earnest in 1928. These included major cuts at Hog, Venice and Mandeville Islands, plus five more smaller straightening projects. The navigation project shortened the river length by 4 miles (6.4 km) and deepened it to 37 feet (11 m). Additional deepening work was carried out in 1968 and 1982. Today, the navigation channel, known as the Stockton Deep Water Ship Channel, can handle fully loaded vessels of up to 60,000 tons and up to 900 feet (270 m) in length. However, the navigation works have unexpectedly led to low dissolved oxygen levels in the lower San Joaquin River, which has hurt fish populations. This is believed to be a result of the combination of the abrupt geometry change from the shallow river upstream of Stockton to the deep water channel, in addition to pollution from the harbor and city and poor tidal mixing.
Big Creek Hydro
By the early 20th century, Californian cities as far south as Los Angeles were looking to new sources for electricity because of their rapidly growing populations and industries. Two visionaries, railroad baron Henry Huntington and engineer John S. Eastwood established a fledgling power company in 1902 today known as Southern California Edison, and acquired water rights to the upper San Joaquin River from the Miller and Lux Corporation. During that year, Huntington and Eastwood devised plans to utilize the water of the San Joaquin River and some of its headwaters tributaries in what would become one of the most extensive hydroelectric systems in the world, known as the Big Creek Hydroelectric Project.
Construction of the system's facilities, which included Mammoth Pool Reservoir and Redinger Lake on the San Joaquin and four additional reservoirs on its tributaries with a total storage capacity of 560,000 acre feet (0.69 km3), started in 1911. A total of eight dams and underground tunnels, the longest of which stretches 21,600 feet (6,600 m), and nine powerhouses with a total installed capacity of 1,000 MW were built in stages spanning the 20th century, with the last powerhouse coming on line in 1987. The consistent use and reuse of the waters of the San Joaquin River, its South Fork, and the namesake of the project, Big Creek, over a vertical drop of 6,200 feet (1,900 m), have over the years inspired a nickname, "The Hardest Working Water in the World".
Federal and state projects
As early as the 1870s, state and federal agencies were already looking at the Central Valley as an area in need of a large water transport project. In 1931 California came up with the State Water Plan, which entailed the construction of dams and canals to transport water from the Sacramento River to the rapidly dwindling San Joaquin. The project was still in its planning stages when the Great Depression hit the United States, and California was unable to raise the funds necessary for building the various facilities. Resultantly, the project was transferred to the federal government and switched hands several times between the U.S. Army Corps of Engineers (USACE) and U.S. Bureau of Reclamation (USBR) before finally being authorized in the Rivers and Harbors Act of 1937 as a USBR undertaking and part of the New Deal, a series of large-scale reforms and construction projects intended to provide jobs for the millions of unemployed during the Depression.
Construction of Friant Dam, the main dam on the San Joaquin River, began in 1937 and was completed in 1942. The dam serves for irrigation and flood control storage, but its main purpose is to divert water into the Madera Canal, which runs northwest along the San Joaquin Valley to the Chowchilla River, and the Friant-Kern Canal, which carries San Joaquin water all the way south into the Tulare Basin, terminating at the Kern River. Both are irrigation and municipal supply canals serving primarily agricultural interests. Water from the Friant Dam supplies almost 1,000,000 acres (4,000 km2) of farmland in Fresno, Kern, Madera, and Tulare counties. Unfortunately, the diversion of water off the San Joaquin at Friant Dam leaves little more than a trickle below the dam in most years, except for releases serving farms in the immediate area downstream of Friant.
A key point for irrigation water distribution on the San Joaquin, despite its small size, is Mendota Dam. Built in 1871 at the juncture of the San Joaquin River and Fresno Slough, it initially served to divert water into the Main Canal, an irrigation canal for the riverside bottomlands in the San Joaquin Valley. In 1951, Mendota became the terminus of the Delta-Mendota Canal, a USBR project which conveys up to 4,600 cubic feet per second (130 m3/s) of water for 117 miles (188 km) from the mouth of the Sacramento River to the usually dry San Joaquin at that point. Water from Mendota is distributed in two directions: released into the San Joaquin for downstream diversions at the Sack Dam, another small diversion dam; and into Fresno Slough during the dry season, when no water is flowing in from the Kings River. The latter sends water into the Tulare Basin through the natural channel of the slough, which in essence conveys water in either direction depending on the time of year – north into the San Joaquin during the rainy season, south into the Tulare during the dry months.
Even with the presence of the Friant and numerous other flood control dams, large floods still caused significant damage along the San Joaquin River all the way through the late 1950s. The passage of the Flood Control Act of 1944 included provisions for the construction of a levee system along part of the San Joaquin River, but valley farmers were not entirely satisfied. After years of lobbying, farmers convinced the state government to authorize a massive flood-control system of diversion channels and levees whose main component is the Eastside Bypass, so named because of its location east of and parallel to the San Joaquin. Groundbreaking of the huge project was in 1959 and construction was finished in 1966.
The bypass system starts with the Chowchilla Canal Bypass, which can divert up to 5,500 cubic feet per second (160 m3/s) off the San Joaquin, a few miles above Mendota. After intercepting the flow of the Fresno River, the system is known as the Eastside Bypass, which runs northwest, crossing numerous tributaries: Berenda and Ash Sloughs, the Chowchilla River, Owens Creek and Bear Creek. Near the terminus, the bypass channel has a capacity of roughly 18,500 cubic feet per second (520 m3/s). The Eastside Bypass ends just upstream of the Merced River confluence, where the San Joaquin levee system is better designed. However, the levees on the bypass channel are generally more well-built than those on the San Joaquin mainstem and thus the channel of the San Joaquin runs dry in some places where the entire flow has been diverted to the bypass system.
Although fairly large with a capacity of 520,500 acre feet (0.6420 km3), Millerton Lake, the reservoir of Friant Dam, is small compared to other reservoirs in the San Joaquin basin, such as Don Pedro and Pine Flat. The Bureau of Reclamation in conjunction with the California Department of Water Resources has proposed the construction of a new dam on the San Joaquin, Temperance Flat Dam, a few miles upstream of Friant. The proposed $1.2-3.5 billion dam would be 665 feet (203 m) high and create a reservoir of 1,260,000 acre feet (1.55 km3), well over twice the capacity of Millerton Lake. Proponents of the project cite numerous benefits: flood control, increased storage, hydroelectric potential, and capacity to provide a greater flow in the downstream river during the dry season. It would also give dam operators the advantage of being able to maintain the river to a lower temperature due to the reservoir's great depth – which would benefit salmon runs. The new reservoir would provide an estimated annual yield of 208,000 acre feet (0.257 km3). Under the most extreme plans, construction could begin as early as 2012 and finish by 2017-2019; state bonds have already been put forth for the project.
However, opponents assert that the upper San Joaquin River, already straitjacketed by dams (Mammoth Pool, No. 6, Redinger, Kerckhoff, Friant, and scores more on tributaries) will not provide sufficient discharge to fill the reservoir except in very wet years. The new reservoir would destroy 15 miles (24 km) of whitewater runs, fishing spots and historic sites on the San Joaquin River, and inundate two Big Creek Hydro powerhouses, causing a potential net loss of electricity generation. Temperance Flat would cause significant evaporation and the water required to fill it would only further stress the San Joaquin River's already strained water supplies, in addition to draining even more money out of the state's floundering budget.
Hundreds of years ago, the San Joaquin flowed freely through a grass and marsh-dominated region variously known as the "California prairie", "California annual grassland", or "Central Valley grasslands". It is widely believed that the dominant grass species throughout the San Joaquin River valley and Tulare Basin, as well as the Sacramento Valley, the Sierra foothills and Coast Ranges, was Nassella pulchra, a type of bunchgrass more commonly known as purple needlegrass. Today, this vegetation community exists only in isolated pockets because of development of the valley for agriculture, and in much of the remnant open areas where it once thrived, now grows introduced flora such as annual rye and wild oat. The vegetation communities created by the introduced grasses are sometimes referred to as "valley grassland", which is highly seasonal but is spread throughout the Central Valley from near Redding to south of Bakersfield. These grasses all thrive in the Mediterranean climate that dominates much of the San Joaquin Valley.
The San Joaquin River and its residual marshes and wetlands provide a critical resting and breeding stop for migratory birds along the Pacific Flyway. Once, the seasonal bird populations in the San Joaquin basin were immense, especially in the now-dry Tulare Lake region: "It took something different, though, to capture the sound of the blue sky as it turned dark and deafening from the wings and cries of millions of native and migratory birds – Canadian geese, mallards, swans, pelicans, cranes, teal, and curlews. How to mimic the sudden flight of flocks so immense they extinguished the sun? One of the first white men to camp along the lake could think of only one noise, the roar of a freight train, that compared with the takeoff of the birds." Historically, the grasslands and the fringes of the great marshes and lakes provided habitat for large grazing animals including pronghorn antelope, mule deer and the endemic tule elk, which in turn had various predators such as the San Joaquin Kit Fox; all of these species have seen drastic declines in populations as their native habitat has fallen under the plow.
Ninety-five percent of the historic wetlands have been largely decimated by development, as well as the California oak woodland habitat, which originally occurred along stream and river corridors in the foothills, and the tule grass that once thrived in huge stands on the edges of marshes and lakes. Some of the richest remaining marsh habitats are in the Sacramento-San Joaquin Delta, which despite significant agricultural and infrastructure development, has retained many of its original swamps and backwaters. Before the 19th century, the delta was a region of numerous islands of nutrient-rich peat, alluvial deposits, winding channels and waterways. Since then, most of the Delta islands have been cultivated, and consistent use of the land has resulted in subsidence, in some cases up to 25 feet (7.6 m); water diversions from the rivers feeding it have caused increased salinity, which has in turn hurt fish species that once thrived in the region.
As defined by the World Wildlife Fund, the San Joaquin River watershed is part of the Sacramento-San Joaquin freshwater ecoregion, which supports almost 40 species of freshwater fish. These include several types of lampreys, sturgeons, sunfish, perch and various anadromous fish species such as salmon and steelhead. Some of these fish are believed to have descended from fishes of the Columbia Basin in geologically ancient times, when the upper reaches of the Sacramento River watershed were connected with that of the Snake River. Up to 75 percent of the historic species were endemic to the Sacramento-San Joaquin basin. Most of the native fish species have suffered because of introduced species and the construction of dams. In a study from 1993 to 1995, it was found that the main stem of the San Joaquin River was mainly populated by fathead minnow, red shiner, threadfin shad and inland silverside, all of which were introduced. Downstream portions of the river's main tributaries were populated mainly by largemouth and smallmouth bass, redear sunfish and white catfish, while native species have only survived relatively well in the upper reaches of the river and its tributaries, which also play host to introduced brown trout.
For its size, the San Joaquin River is one of the most polluted rivers in the United States, especially in its lower course. Years of pesticides and fertilizers being applied to the surrounding lands as well as municipal runoff have led to elevated levels of selenium, fluoride, nitrates and other substances in the river and its tributaries; pesticide pollution is now considered "ubiquitous" to the San Joaquin River system. The selenium is believed to originate from soils on the west side of the valley and in the Coast Ranges, which are rich with the element. Additionally, the San Joaquin is suffering chronic salinity problems due to high levels of minerals being washed off the land by irrigation practices. Abandoned mines contribute toxic acid mine drainage to some tributaries of the river. One of the worst environmental disasters was at Kesterson Reservoir, a disposal site for agricultural drain water which doubled as a wildlife refuge. Initially, animals and plants thrived in the artificial wetlands that were created here, but in 1983, it was found that birds had suffered severe deformities and deaths due to steadily increasing levels of chemicals and toxins. In the next few years, all the fish species died except for the mosquito fish, and algae blooms proliferated in the foul water. These have had not only an adverse impact on San Joaquin River ecology, but also cause pollution to the sources of most of the large aqueducts in the state – the California and Delta-Mendota Canals, for example.
Before irrigation development, the San Joaquin River and its tributaries supported the southernmost run of Pacific salmon in North America including prodigious spring and fall runs of chinook salmon. The California Department of Fish and Game estimated in the 1930s that the historic salmon run was likely in the vicinity of 15,000 fish annually, but by the mid-20th century, reduction in river flows led to the run dropping to about 3,000-7,000. Some sources put the historic populations as high as three hundred thousand, but this is highly unlikely because of the limited habitat available in the watershed.
Construction of dams in the San Joaquin watershed has led to most of the good spawning streams, located higher in the mountains near the headwaters of the San Joaquin and its tributaries, being cut off to the salmon. Introduced fish species such as bluegill and various types of bass that prey on salmon smolt are also a major contributor to the decline. The San Joaquin's point of divergence with the distributary Old River has historically created a sort of bottleneck for outmigrating salmon because the Old River in turn branches into many side-channels and sloughs of the delta as well as various canal intakes. Recent years have seen work by the California Department of Water Resources and the California Department of Fish and Game to construct and manage temporary rock barriers at the head of the Old River in order to keep fish in the main channel of the San Joaquin River. In the fall of 2009, just 2,236 salmon returned to the entire river system to spawn; this has led to a misplaced government ban on salmon fishing off the coasts of northern California and Oregon. Recent years have seen efforts to bring back some of the salmon population to the San Joaquin and some of its tributaries; these include the establishment of fish hatcheries. As of 2011, plans had been finalized for a $14.5 million hatchery near Friant Dam as part of a $20 million federal restoration project for the fish.
Because of the heavy demand of water for agriculture and the insufficient flow of the San Joaquin River, groundwater in the San Joaquin Valley's rich aquifer has been an important source of irrigation supply since the late 19th century. Historically, surface water was able to provide all the needed supply, but as agricultural lands spread across more and more of the valley, groundwater pumping became increasingly common. Also, with the introduction of better technology that allowed farmers to dig deeper wells and install electrical pumps, groundwater was seen as an often cheaper and easily accessible source compared to the river. Water imported from Northern California through the Central Valley Project managed to stave off increasing rates of withdrawal for several years, until the 1977 California drought heavily decreased water supplies from these sources for a while and caused many farmers to return to groundwater pumping.
Groundwater withdrawal reached its peak during the 1960s with more than 8,000,000 acre feet (9.9 km3) being drawn from the aquifer each year – over twice the present flow of the San Joaquin River – which accounted for 69.6% of all the groundwater pumped within the Central Valley, and nearly 14 percent of all the groundwater withdrawn in the United States. In a 1970 study, it was found that more than 5,200 square miles (13,000 km2) of the San Joaquin River valley had been affected by land subsidence in excess of 1 ft (0.30 m). The maximum drop in elevation was near Mendota, the northward bend of the San Joaquin River, at over 28 feet (8.5 m). In some areas, the water table has declined more than 400 feet (120 m) vertically, forcing farmers to sink their wells as deep as 3,500 feet (1,100 m) to hit more abundant pockets of the underground water.
Even after better practices and new sources of water through federal projects, groundwater pumping continues at a tremendous rate. The San Joaquin Valley aquifer lost about 60,000,000 acre feet (74 km3) from 1961 to 2003, which despite being a dramatic reduction from the 1960s, still amounts to nearly 1,500,000 acre feet (1.9 km3) per year. The subsidence caused by groundwater withdrawal has threatened infrastructure in the San Joaquin Valley, including the California Aqueduct, a State Water Project facility that conveys water from the delta region to coastal-central and southern California. Subsidence has also damaged highways and power lines as well as causing some areas to be more susceptible to flooding.
In 2009, the Bureau of Reclamation began to release water from Friant Dam in an effort to restore two once-dry stretches of the San Joaquin of about 64 miles (103 km). These two reaches are from below the dam to Mendota Pool, and from the Sack Dam, a diversion dam approximately 24 miles (39 km) downstream, to the confluence with the Merced River. The flows were initially 350 cubic feet per second (9.9 m3/s) in that year. The increased flows will not only begin to restore large areas of desccicated riverside habitat below the dam, but will serve the primary purpose of restoring salmon runs in the upper San Joaquin watershed. The restoration flows, however, will cause a 12 to 15 percent reduction of water provided by the Friant Division of the CVP with complaints from irrigators in the valley as a result. There has also been a lawsuit regarding damage to farmland west of the San Joaquin, near the town of Los Baños, claiming that the flows are seeping through levees that have not seen use in years due to the drying out of the river channel.
In addition to the dry reaches, the higher discharge in the San Joaquin will help restore a total of 153 miles (246 km) of river, figuring in stretches with low or polluted flows. It is also hoped that the water will help dilute contaimiants in the river caused by pesticides and fertilizers that are applied to the surrounding farmland. In turn, the boost in flow could assist restoration efforts and help flush out saline water in the Sacramento-San Joaquin Delta, where water is pumped into state aqueducts which provide water supplies to two-thirds of Californians. Salmon will be re-introduced to the river in 2012, most habitat conservation work on the San Joaquin River will be completed by 2013, and the USBR will begin releasing up to 600 cubic feet per second (17 m3/s), or "full restoration flows", from the Friant Dam in 2014. Additional rehabilitation work is projected to continue until 2016. The total cost of the restoration, one of the largest river recovery efforts in the United States, could be up to $800 million or even a billion dollars. Approximately $330 million will be paid by Central Valley farmers, and the state and federal governments will provide the remaining funding.
Efforts have been under way to restore wetlands along the San Joaquin River as well as on the historic shores of Tulare Lake. These primarily entail the cleanup of existing wetlands and procuring additional water supplies, rather than converting agricultural land back into the original swamp and marsh. Since wetlands can provide a natural form of flood control – wetlands act like sponges, absorbing flood flows during the rainy season and releasing the accumulated water during the dry season – and also can filter out many forms of toxins, especially from fertilizers, they are important to maintaining good water quality in the San Joaquin River. Wetlands preservation group Ducks Unlimited was awarded a $1 million grant in 2005 as part of the North American Wetlands Conservation Act in order to conduct restoration work on 23,000 acres (93 km2) of swamps and marshes throughout the San Joaquin Valley.
At 31,800 square miles (82,000 km2), the San Joaquin watershed drains a fair swath of inland central California, covering an area nearly the expanse of South Carolina. This includes the 15,600-square-mile (40,000 km2) San Joaquin basin proper, and the 16,200-square-mile (42,000 km2) Tulare Basin, each comparable to the size of the Upper Peninsula of Michigan. This makes it the largest single river basin entirely in the state. The San Joaquin River basin is roughly synonymous with the San Joaquin Valley, and is bounded by the Sierra Nevada to the east, the Coast Ranges on the west, and the Tehachapi Mountains on the south.
The watershed's major southeast-northwest axis runs roughly parallel with the Pacific coast of California; it measures 280 miles (450 km) long and 115 miles (185 km) wide, covering all or parts of seventeen California counties[n 2] (through which the river flows seven) stretching from north of Lodi to well south of Bakersfield. Most of the elevation change in the San Joaquin occurs within the first 97 miles (156 km) above Friant Dam. Its highest headwaters are at over 12,000 feet (3,700 m), but by the time the river reaches the foothills, it is a mere 580 feet (180 m) above sea level.
Historically, the average annual runoff of the San Joaquin was about 6,000,000 to 7,900,000 acre feet (7.4 to 9.7 km3), equalling a flow of roughly 8,300 to 10,900 cubic feet per second (240 to 310 m3/s). Some early estimates even range as high as 14,000,000 acre feet (17 km3), or more than 19,300 cubic feet per second (550 m3/s). The numerous tributaries of the San Joaquin – the Fresno, Chowchilla, Merced, Tuolumne, Mariposa Creek, Calaveras, Mokelumne, and others – flowed freely across alluvial flood plains to join the river. All of the major tributaries of the river originate in the Sierra. Most of the streams that start in the Coast Range are intermittent, and even the perennial ones contribute little to the flow of the San Joaquin. During the winter, spring, and early summer, storms and snowmelt swell the river, while in late summer and autumn, there is little water left to replenish it. Historically, groundwater seepage from Tulare Lake maintained a significant base flow in the river during the dry months – some accounts suggest over 50 percent. The present annual flow of the San Joaquin River is a little over 4,500,000 acre feet (5.6 km3), or only about 5,100 cubic feet per second (140 m3/s).
On the west and northwest, the San Joaquin watershed borders those of rivers draining into the Pacific, while beyond almost all of the other divides lie endorheic basins, mostly of the Great Basin. To the north, a low series of ridges separates the San Joaquin River basin from that of the Sacramento River. The Coast Ranges bound the watershed on the west and borders on the drainages of the Pajaro River, Salinas River and the endorheic Carrizo Plain. On the south, the Tehachapis wall off the San Joaquin Valley from the Mojave Desert. To the east, the Sierra Nevada separate the San Joaquin drainage from those of multiple smaller rivers that terminate in various Great Basin lakes. From north to south, these are the Carson, Walker, and Owens Rivers.
The overwhelming majority of the economic base in the San Joaquin River watershed is provided by agriculture. The valley is widely considered one of the most productive farming regions in the world, and the top four U.S. counties ranked by agricultural production are all located in the San Joaquin watershed and Tulare Basin. The crops grown in these four counties alone are valued at over $12.6 billion annually, while the production of the entire valley is estimated at more than $14.4 billion. The main crop in the valley by annual sales is cotton, but more than 200 types of produce are grown along the San Joaquin River and in the Tulare Basin, including rice, almonds and lettuce just to name a few. Livestock raising is also a major business in the valley. This prodigious output has earned the basin many names, including the "breadbasket" or "salad bowl" of the United States.
As of 2009, the San Joaquin River watershed had a human population of roughly 4,039,000,[n 3] about 1.9 million of whom live within the section of the watershed not including the Tulare Basin. The largest cities are Bakersfield, near the south end of the valley on the Kern River; Fresno, roughly in the geographic center; Modesto, on the Tuolumne River; and Stockton, on the southeast fringe of the Delta region. Other major cities include Visalia, Tulare, Hanford, Porterville, Madera, Merced, Turlock, Manteca and Lodi. Population growth is among the highest in the state of California and more than twice the U.S. average. In Madera County, near the geographic middle of the basin, growth was 51.5% between 1990 and 2003, the highest in the San Joaquin basin. Most of the major cities lie on the State Route 99 corridor, which runs along the entirety of the San Joaquin Valley and forms the primary thoroughfare for the valley. Interstate 5 provides the major transportation route for the west side of the valley.
Land cover in the watershed is predominantly agriculture and forest, and large expanses of shrubland and semiarid foothill terrain also occupy portions of the basin in addition to a growing urban percentage. Irrigated land covers 30% of the watershed followed by forested areas in addition to national forest and park land that encompass 26.8% of the total land area. Built-up areas use a much smaller percentage of the watershed, at just 1.9%. In the San Joaquin's direct drainage region (not including the Tulare Basin) agricultural cover was 19.2%, forests embraced 28.4%, and urban areas occupied 2.4% as of 1995. The basin's main population centers are in the north and south and population density generally increases from west to east. In fact, despite the relatively small percentage of developed areas, more than 50% of the population lives in the watershed's four largest cities: Fresno, Bakersfield, Stockton and Modesto.
Seven major tributaries flow directly into the San Joaquin River, all of which run from the Sierra Nevada westwards into the main stem. In addition, some of the discharge of the Kings River also enters the San Joaquin directly (but seasonally) through a distributary. Of these, the Tuolumne River is the largest in any respect: longest, greatest drainage basin, and highest discharge. The Merced River is the second largest by length and drainage basin, but the Mokelumne River has a greater flow. Tributaries are listed below proceeding from the mouth upstream, with their respective main-stem length, watershed and discharge noted. Rivers of the Tulare Basin are noted below the San Joaquin's direct tributaries with their individual data. Most of the tributaries had much larger flows before irrigation diversions – for example, the Tuolumne's historic discharge was almost 48% higher than it is now.
Name Length Drainage basin Discharge Notes mi km mi2 km2 cfs cms Main stem tributaries Mokelumne River 95 153 1,700 4,400 1,070 30  Calaveras River 52 84 470 1,200 225 6.4  Stanislaus River 96 154 1,075 2,780 962 27.2  Tuolumne River 149 240 1,960 5,100 1,330 38  Merced River 145 233 1,726 4,470 661 18.7  Chowchilla River 54 87 254 660 100 2.8  Fresno River 68 109 320 830 110 3.1  Kings River[n 4] 133 214 1,693 4,380 2,287 64.8  Tributaries via Tulare Lake Kaweah River 59 95 828 2,140 554 15.7  Tule River 49 79 410 1,100 197 5.6  Kern River 164 264 3,612 9,360 941 26.6 
- List of rivers of California
- San Joaquin River National Wildlife Refuge
- ^ The Central Valley as a whole contains 800 million acre-feet (987 km3 of groundwater. Of this, 114 million acre-feet (141 km3) are in the Sacramento Valley. The remaining 686 million acre-feet (846 km3 are in the San Joaquin Valley.
- ^ The counties at least partially in the San Joaquin watershed are, in alphabetical order: Alameda, Alpine, Amador, Calaveras, Contra Costa, Fresno, Kings, Kern, Madera, Mariposa, Merced, Sacramento, San Benito, San Joaquin, Stanislaus, Solano, Tulare, and Tuolumne.
- ^ The population was calculated by adding the populations of 13 of the 18 counties together. Alameda, Sacramento, San Benito, Solano and Contra Costa counties are omitted because they have barely any land within the San Joaquin watershed; in addition, their main population centers are outside of the basin.
- ^ Some water from the Kings flows directly into the San Joaquin via Fresno Slough depending on the season.
- ^ "Middle Fork San Joaquin River". Geographic Names Information System, U.S. Geological Survey. 1981-01-19. http://geonames.usgs.gov/pls/gnispublic/f?p=gnispq:3:::NO::P3_FID:263536. Retrieved 2011-06-11.
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- California Water Plan Update 2005 San Joaquin Hydrologic Region Chapter published by the California Department of Water Resources
- Map of San Joaquin Reclamation and Levee Districts
- San Joaquin River TMDL Description of DO problems on the San Joaquin River
- SanJoaquinBasin.com - A website devoted to the San Joaquin Basin
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