- Nucleoside-diphosphate kinase
-
Nucleoside-diphosphate kinases (NDKs, also NDP Kinase, (poly)nucleotide kinases and nucleoside diphosphokinases) are enzymes that catalyze the exchange of phosphate groups between different nucleoside diphosphates. NDK activities maintain an equilibrium between the concentrations of different nucleoside triphosphates such as, for example, when GTP produced in the citric acid (Krebs) cycle is converted to ATP.[1]
Contents
Function
The overall effect of NDKs is to transfer a phosphate group from a nucleoside triphosphate to a nucleoside diphosphate. Starting with adenosine diphosphate GTP and ADP, the activity of NDK produces GDP and ATP.[1]
- GTP + ADP → GDP + ATP
Behind this apparently simple reaction is a multistep mechanism. The key steps are
- NDK binds a nucleoside triphosphate (NTP)
- NDK transfers a phosphate to itself, leaving a bound nucleoside diphosphate (NDP)
- NDK releases the bound nucloside diphosphate
- NDK binds another nucleoside diphosphate
- NDK transfers the phosphate to the diphosphate, creating a bound nucleoside triphosphate
- NDK releases the new nucleoside triphosphate
Each step is part of a reversible process, such that the multistep equilibrium is of the following form.
- NDK + NTP ↔ NDK~NTP ↔ NDK-P~NDP ↔ NDK-P + NDP
For the transfer of a phosphate from ATP to GDP, the reaction would proceed as
- NDK + ATP → NDK~ATP → NDK-P~ADP → NDK-P + ADP →
- NDK-P + GDP → NDK-P~GDP → NDK~GTP → NDK + GTP
Prokaryotic systems
Prokaryotic NDK forms a functional homotetramer.
Eukaryotic systems
There are two isoforms of NDK in humans: NDK-A and NDK-B. Both have very similar structure, and can combine in any proportion to form functional NDK hexamers.
See also
References
- ^ a b Berg, JM; JL Tymoczko, L Stryer (2002). Biochemistry - 5th Edition. WH Freeman and Company. p. 476. ISBN 0-7167-4684-0.
External links
Transferases: phosphorus-containing groups (EC 2.7) 2.7.1-2.7.4:
phosphotransferase/kinase
(PO4)Hexo- · Gluco- · Fructo- (Hepatic) · Galacto- · Phosphofructo- (1, Liver, Muscle, Platelet, 2) · Riboflavin · Shikimate · Thymidine (ADP-thymidine) · NAD+ · Glycerol · Pantothenate · Mevalonate · Pyruvate · Deoxycytidine · PFP · Diacylglycerol · Phosphoinositide 3 (Class I PI 3, Class II PI 3) · Sphingosine · Glucose-1,6-bisphosphate synthase2.7.2: COOH acceptorPhosphomevalonate · Adenylate · Nucleoside-diphosphate · Uridylate · Guanylate · Thiamine-diphosphate2.7.6: diphosphotransferase
(P2O7)2.7.7: nucleotidyltransferase
(PO4-nucleoside)DNA-directed DNA polymerase: DNA polymerase I · DNA polymerase II · DNA polymerase III holoenzyme
DNA nucleotidylexotransferase/Terminal deoxynucleotidyl transferase
RNA-directed DNA polymerase: Reverse transcriptase (Telomerase)RNA nucleotidyltransferaseRNA polymerase/DNA-directed RNA polymerase: RNA polymerase I · RNA polymerase II · RNA polymerase III · RNA polymerase IV · Primase · RNA-dependent RNA polymerase
PNPaseUridylyltransferaseGlucose-1-phosphate uridylyltransferase · Galactose-1-phosphate uridylyltransferaseGuanylyltransferasemRNA capping enzymeOther2.7.8: miscellaneous PhosphatidyltransferasesCDP-diacylglycerol—glycerol-3-phosphate 3-phosphatidyltransferase · CDP-diacylglycerol—serine O-phosphatidyltransferase · CDP-diacylglycerol—inositol 3-phosphatidyltransferase · CDP-diacylglycerol—choline O-phosphatidyltransferaseGlycosyl-1-phosphotransferase2.7.10-2.7.13: protein kinase
(PO4; protein acceptor)see tyrosine kinasessee serine/threonine-specific protein kinases2.7.12: protein-dual-specificitysee serine/threonine-specific protein kinases2.7.13: protein-histidineB enzm: 1.1/2/3/4/5/6/7/8/10/11/13/14/15-18, 2.1/2/3/4/5/6/7/8, 2.7.10, 2.7.11-12, 3.1/2/3/4/5/6/7, 3.1.3.48, 3.4.21/22/23/24, 4.1/2/3/4/5/6, 5.1/2/3/4/99, 6.1-3/4/5-6 Purine metabolism AnabolismR5P->IMP: Ribose-phosphate diphosphokinase · Amidophosphoribosyltransferase · Phosphoribosylglycinamide formyltransferase · AIR synthetase (FGAM cyclase) · Phosphoribosylaminoimidazole carboxylase · Phosphoribosylaminoimidazolesuccinocarboxamide synthase · IMP synthase
IMP->AMP: Adenylosuccinate synthase · Adenylosuccinate lyase · reverse (AMP deaminase)
IMP->GMP: IMP dehydrogenase · GMP synthase · reverse (GMP reductase)CatabolismPyrimidine metabolism AnabolismCatabolismDeoxyribonucleotides Ribonucleotide reductase · Nucleoside-diphosphate kinase · DCMP deaminase · Thymidylate synthase · Dihydrofolate reductaseThis enzyme-related article is a stub. You can help Wikipedia by expanding it.