Cyclen

Cyclen
IUPAC name 1,4,7,10-tetrazacyclododecane
Identifiers
CAS number	294-90-6
PubChem	64963
ChemSpider	58488 Y
ChEBI	CHEBI:37391 Y
ChEMBL	CHEMBL19880 Y
Jmol-3D images	Image 1 Image 2
SMILES N1CCNCCNCCNCC1 C1CNCCNCCNCCN1
InChI InChI=1S/C8H20N4/c1-2-10-5-6-12-8-7-11-4-3-9-1/h9-12H,1-8H2 Y Key: QBPPRVHXOZRESW-UHFFFAOYSA-N Y InChI=1/C8H20N4/c1-2-10-5-6-12-8-7-11-4-3-9-1/h9-12H,1-8H2 Key: QBPPRVHXOZRESW-UHFFFAOYAQ
Properties
Molecular formula	C8H20N4
Molar mass	172.271
Appearance	White Solid
Y (verify) (what is: Y/N?) Except where noted otherwise, data are given for materials in their standard state (at 25 °C, 100 kPa)
Infobox references

Crystal structure of a Zn(II) coordinated to a cyclen and an ethanol reported in Inorg. Chem., 1997, 4579-4584.

Cyclen or 1,4,7,10-tetraazacyclododecane is a macrocycle and the aza analogue of the crown ether 12-crown-4. Derivatives of cyclen are larger cyclic polyamines but the repeating unit (ethyleneimine) is always the same. Like crown ethers, cyclen compounds are capable of selectively binding cations. They are used as a ligand in chemistry for instance with chemicals used in MRI contrast agents.

Synthesis

Cyclen compounds can be synthesized by combining two separate parts by nucleophilic displacement.^[1] In this procedure the terminal amine groups in diethylene triamine (1) are activated as amine anionic nucleophiles by reaction with tosyl chloride in pyridine to the N-tosyl protective group followed by proton abstraction with sodium ethoxide. The alcohol end groups in diethanolamine (2) are activated as electrophile by converting them into tosyl leaving groups. The two segments are joined in dimethylformamide and unless the reactants are very diluted, ordinary polymerization will take place to long linear chains and not cyclization. In the final step the tosyl groups are removed with sulfuric acid.

High dilution conditions result in a low reaction rate penalty and this disadvantage is removed in an alternative procedure starting from triethylenetetraamine and dithiooxamide to a bisamidine (also a bis(imidazoline)) followed by reduction and ring expansion with DIBAL.^[2]

In one study ^[3] cyclen is covalently bonded through a propylene molecular spacer to adenine and chelated with zinc diperchlorate. This complex is able to selectively bind uracil and uridine in a 1:2 ratio both through the adenine part and cyclen part of the molecule as evidenced by mass spectrometry.

See also

• Cyclam

References

1. ^ ^{a b} T. J. Atkins, J. E. Richman, and W. F. Oettle (1988), "1,4,7,10,13,16-Hexaazacyclooctadecane", Org. Synth., http://www.orgsyn.org/orgsyn/orgsyn/prepContent.asp?prep=cv6p0652 ; Coll. Vol. 6: 652 
2. ^ David P. Reed and Gary R. Weisman (2004), "1,4,7,10-Tetraazacyclododecane", Org. Synth., http://www.orgsyn.org/orgsyn/orgsyn/prepContent.asp?prep=v78p0073 ; Coll. Vol. 10: 667 
3. ^ Chuan-Qin Xia, Xin-Yu Tan, Shan-Yong Chen, Yang Yue, and Xiao-Qi Yu (2006). "The conjugate of adenine–cyclen Zn(II) complex: its synthesis and selective recognition abilities for uracil and uridine". Arkivoc ii: 68–76. http://www.arkat-usa.org/ark/journal/2006/I02_General/1675/05-1675HP%20as%20published%20mainmanuscript.pdf. 

Further reading

• Suchý, M.; Hudson, R. H. E. (2008). "Synthetic Strategies Toward N-Functionalized Cyclens". Eur. J. Org. Chem. 2008 (29): 4847–4865. doi:10.1002/ejoc.200800636.