Arginase

Liver arginase
ArginasePDB 1CEV.
Identifiers
Symbol	ARG1
Entrez	383
HUGO	663
OMIM	608313
RefSeq	NM_000045
UniProt	P05089
Other data
EC number	3.5.3.1
Locus	Chr. 6 q23

Arginase, type II
Identifiers
Symbol	ARG2
Entrez	384
HUGO	664
OMIM	107830
RefSeq	NM_001172
UniProt	P78540
Other data
EC number	3.5.3.1
Locus	Chr. 14 q24.1

Arginase
arginase from bacillus caldevelox, l-ornithine complex
Identifiers
Symbol	Arginase
Pfam	PF00491
Pfam clan	CL0302
InterPro	IPR006035
PROSITE	PDOC00135
SCOP	1rla
Available protein structures: Pfam structures PDB RCSB PDB; PDBe PDBsum structure summary

Arginase is a manganese-containing enzyme. The reaction catalyzed by this enzyme is: arginine + H₂O → ornithine + urea. It is the final enzyme of the urea cycle.

Structure and Function of Arginase

Arginase is the fifth and final step in the urea cycle, a series of biophysical reactions in mammals during which the body disposes of harmful ammonia. Specifically, arginase converts L-arginine into L-ornithine and urea.^[1] In most mammals, two isozymes of this enzyme exist; the first, Arginase I, functions in the urea cycle, and is located primarily in the cytoplasm of the liver. The second isozyme, Arginase II, has been implicated in the regulation of the arginine/ornithine concentrations in the cell. It is located in mitochondria of several tissues in the body, with most abundance in the kidney and prostate. It may be found at lower levels in macrophages, lactating mammary glands, and brain.^[2] The second isozyme may be found in the absence of other urea cycle enzymes.^[3] Arginase consists of three tetramers. The enzyme requires a two-molecule metal cluster of manganese in order to maintain proper function. These Mn²⁺ ions coordinate with water, orientating and stabilizing the molecule and allowing water to act as a nucleophile and attack L-arginine, hydrolyzing it into ornithine and urea.^[3]

Ribbon diagram of cobalt-reconstituted human arginase I

^[3]. PDB ([1]) rendered using PyMOL.]]

Mechanism

The active site holds L-arginine in place via hydrogen bonding between the guanidinium group with Glu227. This bonding orients L-arginine for nucleophilic attack by the metal-associated hydroxide ion at the guanidinium group. This results in a tetrahedral intermediate. The manganese ions act to stabilize both the hydroxyl group in the tetrahedral intermediate, as well as the developing sp3 lone electron pair on the NH₂ group as the tetrahedral intermediate is formed.^[4]

Arginase's active site is extraordinarily specific. Modifying the substrate structure and/or stereochemistry severely lowers the kinetic activity of the enzyme. This specificity occurs due to the high number of hydrogen bonds between substrate and enzyme; direct or water-facilitated hydrogen bonds exist, saturating both the four acceptor positions on the alpha carboxylate group and all three positions on the alpha amino group. N-hydroxy-L-arginine (NOHA), an intermediate of NO biosynthesis, is a moderate inhibitor of arginase. Crystal structure of its complex with the enzyme reveals that it displaces the metal-bridging hydroxide ion and bridges the binuclear manganese cluster.^[4]

Additionally, 2(S)-amino-6-boronohexonic acid (ABH) is an L-arginine analogue that also creates a tetrahedral intermediate similar to that formed in the catalysis of the natural substrate, and is a potent inhibitor of human arginase I.^[5]

Role in Sexual Response

Arginase II is coexpressed with nitric oxide (NO) synthase in smooth muscle tissue, such as the muscle in the genitals of both men and women. The contraction and relaxation of these muscles has been attributed to NO synthase, which causes rapid relaxation of smooth muscle tissue and facilitates engorgement of tissue necessary for normal sexual response. However, since NO synthase and arginase compete for the same substrate (L-arginine), over-expressed arginase can affect NO synthase activity and NO-dependent smooth muscle relaxation by depleting the substrate pool of L-arginine that would otherwise be available to NO synthase. In contrast, inhibiting arginase with ABH or other boronic acid inhibitors will maintain normal cellular levels of arginine, thus allowing for normal muscle relaxation and sexual response.^[6]

Recent studies have implicated arginase as a controlling factor in both male erectile function and female sexual arousal, and is therefore a potential target for treatment of sexual dysfunction in both sexes. Additionally, supplementing the diet with additional L-arginine will decrease the amount of competition between arginase and NO synthase by providing extra substrate for each enzyme.^[7]

Pathology

Arginase deficiency typically refers to decreased function of arginase I, the liver isoform of arginase. This deficiency is commonly referred to as hyperargininemia or arginemia. The disorder is hereditary and autosomal recessive. It is characterized by lowered activity of arginase in hepatic cells. Additionally, the disorder is considered to be the rarest of the heritable defects in ureagenesis. Unlike other urea cycle disorders, ureagenesis still persists in subjects with arginase deficiency. A proposed reason for the continuation of arginase function is suggested by increased activity of arginase II in the kidneys of subjects with arginase I deficiency. Researchers believe that buildup of arginine triggers increased expression of arginase II. The enzymes in the kidney will then catalyze ureagenesis, compensating somewhat for a decrease in arginase I activity in the liver. Due to this alternate method of removing excess arginine and ammonia from the bloodstream, subjects with arginase deficiency tend to have longer lifespans than those who have other urea cycle defects.^[8]

Symptoms of the disorder include neurological impairment, dementia, retardation of growth, and hyperammonemia. While some symptoms of the disease can be controlled via dietary restrictions and pharmaceutical developments, no cure or completely effective therapy currently exists.^[8]

References

1. ^ Wu G, Morris SM (November 1998). "Arginine metabolism: nitric oxide and beyond". The Biochemical journal. 336 ( Pt 1): 1–17. PMC 1219836. PMID 9806879. http://www.biochemj.org/bj/336/0001/bj3360001.htm. 
2. ^ Morris SM (2002). "Regulation of enzymes of the urea cycle and arginine metabolism". Annual review of nutrition 22 (1): 87–105. doi:10.1146/annurev.nutr.22.110801.140547. PMID 12055339. 
3. ^ ^{a b c} Di Costanzo L, Moulin M, Haertlein M, Meilleur F, Christianson DW (September 2007). "Expression, purification, assay, and crystal structure of perdeuterated human arginase I". Archives of biochemistry and biophysics 465 (1): 82–9. doi:10.1016/j.abb.2007.04.036. PMC 2018606. PMID 17562323. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2018606. 
4. ^ ^{a b} Reczkowski RS, Ash DE (July 1994). "Rat liver arginase: kinetic mechanism, alternate substrates, and inhibitors". Archives of biochemistry and biophysics 312 (1): 31–7. doi:10.1006/abbi.1994.1276. PMID 8031143. 
5. ^ Cox JD, Kim NN, Traish AM, Christianson DW (November 1999). "Arginase-boronic acid complex highlights a physiological role in erectile function". Nature structural biology 6 (11): 1043–7. doi:10.1038/14929. PMID 10542097. 
6. ^ Cama E, Colleluori DM, Emig FA, Shin H, Kim SW, Kim NN, Traish AM, Ash DE, Christianson DW (July 2003). "Human arginase II: crystal structure and physiological role in male and female sexual arousal". Biochemistry 42 (28): 8445–51. doi:10.1021/bi034340j. PMID 12859189. 
7. ^ Moody JA, Vernet D, Laidlaw S, Rajfer J, Gonzalez-Cadavid NF (September 1997). "Effects of long-term oral administration of L-arginine on the rat erectile response". The Journal of urology 158 (3 Pt 1): 942–7. doi:10.1016/S0022-5347(01)64368-4. PMID 9258123. 
8. ^ ^{a b} Iyer RK, Yoo PK, Kern RM, Rozengurt N, Tsoa R, O'Brien WE, Yu H, Grody WW, Cederbaum SD (July 2002). "Mouse model for human arginase deficiency". Molecular and cellular biology 22 (13): 4491–8. doi:10.1128/MCB.22.13.4491-4498.2002. PMC 133904. PMID 12052859. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=133904. 

External links

• GeneReviews/NIH/NCBI/UW entry on Arginase Deficiency
• MeSH Arginase
• Arginase family signature and profile in PROSITE