Biological target

Biological target

A biological target is a biopolymer such as a protein or nucleic acid whose activity can be modified by an external stimulus. The definition is context-dependent and can refer to the biological target of a pharmacologically active drug compound, or the receptor target of a hormone (like insulin). The implication is that a molecule is "hit" by a signal and its behavior is thereby changed. Biological targets are most commonly proteins such as enzymes, ion channels, and receptors.

Contents

Mechanism

The external stimulus (i.e., chemical substance) physically binds to the biological target.[1][2] The interaction between the substance and the target may be:

  • noncovalent
  • reversible covalent - A chemical reaction occurs between the stimulus and target in which the stimulus becomes chemically bonded to the target, but the reverse reaction also readily occurs in which the bond can be broken.
  • irreversible covalent - The stimulus is permanently bound to the target through irreversible chemical bond formation.

Depending on the nature of the stimulus, the following can occur:

  • There is no direct change in the biological target, except that the binding of the substance prevents other endogenous substances such as activating hormone to bind to the target. Depending on the nature of the target, this effect is referred as receptor antagonism, enzyme inhibition, or ion channel blockade.
  • A conformational change in the target is induced by the stimulus which results in a change in target function. This change in function can mimic the effect of the endogenous substance in which case the effect is referred to as receptor agonism (or channel or enzyme activation) or be the opposite of the endogenous substance which in the case of receptors is referred to as inverse agonism.

Drug targets

The term biological target is frequently used in pharmaceutical research to describe the native protein in the body whose activity is modified by a drug resulting in a desirable therapeutic effect. In this context, the biological target is often referred to as a drug target. The most common drug targets of currently marketed drugs include:[3][4]

Databases

Databases containing biological targets information:

  • Therapeutic Targets Database (TTD)
  • DrugBank
  • Binding DB

References

  1. ^ Raffa RB, Porreca F (1989). "Thermodynamic analysis of the drug-receptor interaction". Life Sci. 44 (4): 245–58. doi:10.1016/0024-3205(89)90182-3. PMID 2536880. 
  2. ^ Moy VT, Florin EL, Gaub HE (1994). "Intermolecular forces and energies between ligands and receptors". Science 266 (5183): 257–9. doi:10.1126/science.7939660. PMID 7939660. 
  3. ^ Overington JP, Al-Lazikani B, Hopkins AL (2006). "How many drug targets are there?". Nat Rev Drug Discov 5 (12): 993–6. doi:10.1038/nrd2199. PMID 17139284. 
  4. ^ Landry Y, Gies JP (2008). "Drugs and their molecular targets: an updated overview". Fundam Clin Pharmacol. 22 (1): 1–18. doi:10.1111/j.1472-8206.2007.00548.x. PMID 18251718. 
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