Nuclear magnetic resonance crystallography

Nuclear magnetic resonance crystallography

Nuclear magnetic resonance crystallography (NMR crystallography) is a method which utilizes primarily NMR spectroscopy to determine the structure of solid materials on the atomic scale. Thus, solid-state NMR spectroscopy would be used primarily, possibly supplemented by quantum chemistry calculations, powder diffraction[1] etc. If suitable crystals can be grown, any crystallographic method would generally be preferred to determine the crystal structure comprising in case of organic compounds the molecular structures and molecular packing. The main interest in NMR crystallography is in microcrystalline and amorphous materials which are amenable to this method but not to X-ray, neutron and electron diffraction. This is largely because interactions of comparably short range are measured in NMR crystallography.

Contents

Introduction

When applied to organic molecules, NMR crystallography aims at including structural information not only of a single molecule but also on the molecular packing (i.e. crystal structure).[2][3] E.g. polymorphism is an area of interest for NMR crystallography since this is encountered occasionally (and may often be previously undiscovered) in organic compounds. In this case a change in the molecular structure and/or in the molecular packing can lead to polymorphism, and this can be investigated by NMR crystallography.[4][5]

Dipolar couplings based approach

The spin interaction that is usually employed for structural analyses via solid state NMR spectroscopy is the magnetic dipolar interaction.[6] Additional knowledge about other interactions within the studied system like the chemical shift or the electric quadrupole interaction can be helpful as well, and in some cases solely the chemical shift has been employed as e.g. for zeolites.[7] The “dipole coupling” based approach parallels protein NMR spectroscopy to some extent in that e.g. multiple residual dipolar couplings are measured for proteins in solution, and these couplings are used as constraints in the protein structure calculation.

In NMR crystallography the observed spins in case of organic molecules would often be half-integer, “low-gamma” spins (13
C
, 15
N
, 31
P
, etc.). I.e. 1
H
is excluded due to its large magnetogyric ratio and high spin concentration leading to a network of strong homonuclear dipolar couplings. There are two solutions with respect to 1H: 1
H
spin diffusion experiments (see below) and specific labelling with 2
H
spins (spin = 1). The latter is also popular e.g. in NMR spectroscopic investigations of hydrogen bonds in solution and the solid state.[8] Both intra- and intermolecular structural elements can be investigated e.g. via deuterium REDOR (an established solid state NMR pulse sequence to measure dipolar couplings between deuterons and other spins).[9] This can provide an additional constraint for an NMR crystallographic structural investigation in that it can be used to find and characterize e.g. intermolecular hydrogen bonds.

Dipolar interaction

The above mentioned dipolar interaction can be measured directly, e.g. between pairs of heteronuclear spins like 13C/15N in many organic compounds.[3] Furthermore, the strength of the dipolar interaction modulates parameters like the longitudinal relaxation time or the spin diffusion rate which therefore can be examined to obtain structural information. E.g. 1H spin diffusion has been measured providing rich structural information.[10]

Chemical shift interaction

The chemical shift interaction can be used in conjunction with the dipolar interaction to determine the orientation of the dipolar interaction frame (principle axes system) with respect to the molecular frame (dipolar chemical shift spectroscopy). For some cases there are rules for the chemical shift interaction tensor orientation as for the 13C spin in ketones due to symmetry arguments (sp2 hybridisation). If the orientation of a dipolar interaction (between the spin of interest and e.g. another heteronucleus) is measured with respect to the chemical shift interaction coordinate system, these two pieces of information (chemical shift tensor/molecular orientation and the dipole tensor/chemical shift tensor orientation) combined give the orientation of the dipole tensor in the molecular frame.[11] However, this method is only suitable for small molecules (or polymers with a small repetition unit like polyglycine) and it provides only selective (and usually intramolecular) structural information.

Comparison with diffraction methods

A drawback of NMR crystallography is that the method is typically more time consuming and more expensive (due to spectrometer costs and isotope labelling) than X-ray crystallography, it often elucidates only part of the structure, and isotope labelling and experiments may have to be tailored to obtain key structural information. Also not always is a molecular structure suitable for a pure NMR based NMR crystallographic approach, but it can still play an important role in a multimodality (NMR+diffraction) study.[12]

References

  1. ^ Harris KDM, Xu M (2009). Combined Analysis of NMR & Powder Diffraction Data. Wiley-Blackwell. ISBN 0470699612. 
  2. ^ Taulelle F (2004). "NMR crystallography: crystallochemical formula and space group selection". Solid State Sciences 6 (10): 1053–1057. Bibcode 2004SSSci...6.1053T. doi:10.1016/j.solidstatesciences.2004.07.033. 
  3. ^ a b Macholl S, Börner F, Buntkowsky G (2004). "Revealing the configuration and crystal packing of organic compounds by solid-state NMR spectroscopy: methoxycarbonylurea, a case study". Chemistry 10 (19): 4808–4816. doi:10.1002/chem.200400191. PMID 15372663. 
  4. ^ Harris RK (2006). "NMR studies of organic polymorphs & solvates". Analyst 131: 351–373. Bibcode 2006Ana...131..351H. doi:10.1039/b516057j. PMID 16496044. 
  5. ^ Reutzel-Edens SM (2008). "NMR Crystallography and the Elucidation of Structure-Property Relationships in Crystalline Solids". Engineering of Crystalline Materials Properties, NATO Science for Peace and Security Series B: Physics and Biophysics: 351–374. doi:10.1007/978-1-4020-6823-2_17. 
  6. ^ Schmidt-Rohr K., Spiess H.W. (1994). Multidimensional Solid-State NMR and Polymers. Academic Press. ISBN 0126266301. 
  7. ^ Brouwer DH (2008). "NMR Crystallography of Zeolites: Refinement of an NMR-Solved Crystal Structure Using ab Initio Calculations of 29Si Chemical Shift Tensors". J. Am. Chem. Soc. 130: 6306–6307. doi:10.1021/ja800227f. PMID 18433131. 
  8. ^ Kohen A., Limbach H.-H. (2005). Isotope Effects In Chemistry and Biology. Boca Raton, FL: CRC Press. ISBN 0824724496. 
  9. ^ Sack I, Goldbourt A, Vega S, Buntkowsky G (1999). "Deuterium REDOR: principles and applications for distance measurements". J Magn Reson 138 (1): 54–65. Bibcode 1999JMagR.138...54S. doi:10.1006/jmre.1999.1710. PMID 10329226. 
  10. ^ Elena B, Pintacuda G, Mifsud N, Emsley L (2006). "Molecular Structure Determination in Powders by NMR Crystallography from Proton Spin Diffusion". J. Am. Chem. Soc. 128: 9555–9560. doi:10.1021/ja062353p. PMID 16848494. 
  11. ^ Mehring M. (1983). High Resolution NMR Spectroscopy in Solids. Berlin, Heidelberg, New York: Springer. ISBN 0387077049. 
  12. ^ Macholl S, Lentz D, Börner F, Buntkowsky G (2007). "Polymorphism of N,N-diacetylbiuret studied by solid-state 13C and 15N NMR spectroscopy, DFT calculations, and X-ray diffraction". Chemistry 13 (21): 6139–6149. doi:10.1002/chem.200601843. PMID 17480047. 

Wikimedia Foundation. 2010.

Look at other dictionaries:

  • Nuclear magnetic resonance spectroscopy of proteins — (usually abbreviated protein NMR) is a field of structural biology in which NMR spectroscopy is used to obtain information about the structure and dynamics of proteins. The field was pioneered by Richard R. Ernst and Kurt Wüthrich[1], among… …   Wikipedia

  • Nuclear magnetic resonance spectroscopy of nucleic acids — Nuclear magnetic resonance spectroscopy of nucleic acids, often referred to as nucleic acid NMR, is the use of nuclear magnetic resonance spectroscopy to obtain information about the structure and dynamics of nucleic acid molecules, such as DNA… …   Wikipedia

  • Nuclear magnetic resonance — This article is about the physical phenomenon. For its use as a method in spectroscopy, see Nuclear magnetic resonance spectroscopy. NMR redirects here. For other uses, see NMR (disambiguation). First 1 GHz NMR Spectrometer (1000 MHz,… …   Wikipedia

  • Nuclear magnetic resonance spectroscopy — A 900MHz NMR instrument with a 21.2 T magnet at HWB NMR, Birmingham, UK Nuclear magnetic resonance spectroscopy, most commonly known as NMR spectroscopy, is a research technique that exploits the magnetic properties of certain atomic nuclei… …   Wikipedia

  • Protein nuclear magnetic resonance spectroscopy — (usually abbreviated protein NMR) is a field of structural biology in which NMR spectroscopy is used to obtain information about the structure and dynamics of proteins. The field was pioneered by, among others, Kurt Wüthrich, who shared the Nobel …   Wikipedia

  • Solid-state nuclear magnetic resonance — (NMR) spectroscopy, characterized by the presence of anisotropic (directionally dependent) interactions.IntroductionBasic conceptsA spin interacts with a magnetic or an electric field. Spatial proximity and/or a chemical bond between two atoms… …   Wikipedia

  • Magnetic resonance force microscopy — (MRFM) is an imaging technique that acquires magnetic resonance images (MRI) at nanometer scales, and possibly at atomic scales in the future. MRFM is potentially able to observe protein structures which cannot be seen using X ray crystallography …   Wikipedia

  • Journal of Magnetic Resonance —   Titre abrégé J. Magn. Reson. Discipline Spectroscopie …   Wikipédia en Français

  • Nuclear chemistry — is the subfield of chemistry dealing with radioactivity, nuclear processes and nuclear properties. It is the chemistry of radioactive elements such as the actinides, radium and radon together with the chemistry associated with equipment (such as… …   Wikipedia

  • Magnetic dipole–dipole interaction — Magnetic dipole–dipole interaction, also called dipolar coupling, refers to the direct interaction between two magnetic dipoles. The potential energy of the interaction is as follows: where ejk is a unit vector parallel to the line joining the… …   Wikipedia

Share the article and excerpts

Direct link
Do a right-click on the link above
and select “Copy Link”