Distributed Annotation System

The Distributed Annotation System (DAS) is used in bioinformatics to share and collate genomic annotation information.^[1][2][3] It is an open source project.

From the biodas.org web site:

The distributed annotation system (DAS) is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up genome annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers.

Sites and tools currently using DAS

• The DAS registration server
• Ensembl The Ensembl Genome Browser
• UCSC Genome Browser
• WormBase
• FlyBase
• TIGR
• ProServer
• SUPERFAMILY
• InterPro

DAS clients

Name	Description	Links
BioJava DAS Client
Dasty	A web client for visualizing protein sequence feature information using DAS	[1] [2]
DasView	A server-side Perl application. This tool is mentioned in the original DAS publication, but has subsequently disappeared.
EnsEMBL	The EnsEMBL Genome Browser. Provides built-in support for DAS	[3]
Geodesic	An stand-alone Java application	[4]
IGB	The Integrated Genome Browser (IGB, pronounced "ig-bee") is an application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources	[5]
Jalview	A multiple sequence alignment editor & viewer	[6]
OmniGene	The user interface is based on the EnsEMBL interface	[7] [8]
SPICE	A browser for the annotations for protein sequences and structures	[9] [10] [11]
STRAP	Underlining sequence features in multiple alignments. Example output: [12]	[13]
TIGR DAS Viewer		[14] ?
WormBase	The WormBase genome Browser. Includes a DAS viewer named DASView

Edit this table

References

1. ^ Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L (2001). "The distributed annotation system.". BMC Bioinformatics 2: 7. doi:10.1186/1471-2105-2-7. PMC 58584. PMID 11667947. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=58584. 
2. ^ Finn RD, Stalker JW, Jackson DK, Kulesha E, Clements J, Pettett R (2007). "ProServer: a simple, extensible Perl DAS server.". Bioinformatics 23 (12): 1568–70. doi:10.1093/bioinformatics/btl650. PMC 2989875. PMID 17237073. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2989875. 
3. ^ Jenkinson AM, Albrecht M, Birney E, Blankenburg H, Down T, Finn RD, Hermjakob H, Hubbard TJ, Jimenez RC, Jones P, Kähäri A, Kulesha E, Macías JR, Reeves GA, Prlic A (2008). "Integrating biological data - the Distributed Annotation System.". BMC Bioinformatics. 9 Suppl 8: S3. doi:10.1186/1471-2105-9-S8-S3. PMC 2500094. PMID 18673527. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2500094. 

External links

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This bioinformatics-related article is a stub. You can help Wikipedia by expanding it.v · Categories: Bioinformatics Bioinformatics stubs Wikimedia Foundation. 2010. Игры ⚽ Поможем решить контрольную работу Calum Maclean Sylvester's formula Look at other dictionaries: List of distributed computing projects — A list of distributed computing projects. Berkeley Open Infrastructure for Network Computing (BOINC) The Berkeley Open Infrastructure for Network Computing (BOINC) platform is currently the most popular volunteer based distributed computing… …   Wikipedia Kepler scientific workflow system — Kepler is a free software system for designing, executing, and sharing scientific workflowsLudäscher B., Altintas I., Berkley C., Higgins D., Jaeger Frank E., Jones M., Lee E., Tao J., Zhao Y. 2006. Scientific Workflow Management and the Kepler… …   Wikipedia ENSEMBL — est un système bio informatique d annotation automatique de génomes. C est un projet conjoint de l European Bioinformatics Institute (EBI) et du Wellcome Trust Sanger Institute dont l idée centrale est d organiser de vastes champs d information… …   Wikipédia en Français Ensembl — est un système bio informatique d annotation automatique de génomes. C est un projet conjoint de l European Bioinformatics Institute (EBI) et du Wellcome Trust Sanger Institute dont l idée centrale est d organiser de vastes champs d information… …   Wikipédia en Français Das — or DAS may refer to: Das (crater), a lunar impact crater on the far side of the Moon Das (island), an Emirati island in the Persian Gulf Das (surname), a common surname or title in the Indian Subcontinent Das (studio), a Japanese adult video… …   Wikipedia DAS — Department Of Administrative Services (Governmental » US Government) *** Direct Attached Storage (Computing » Networking) ** Data Acquisition System (Computing » General) * Days After Sowing (Miscellaneous » Unit Measures) * Distributed… …   Abbreviations dictionary DAS — Die Abkürzung D.A.S. steht für: D.A.S., Deutscher Automobilschutz, eine Versicherung Die Abkürzung DAS steht für: Departamento Administrativo de Seguridad (kolumbianischer Geheimdienst) Deutsche Afrika Stiftung Deutscher Allgemeiner Sängerbund… …   Deutsch Wikipedia Das — Die Abkürzung D.A.S. steht für: D.A.S., Deutscher Automobilschutz, eine Versicherung Die Abkürzung DAS steht für: Departamento Administrativo de Seguridad (kolumbianischer Geheimdienst) Deutsche Afrika Stiftung Deutscher Allgemeiner Sängerbund… …   Deutsch Wikipedia Ensembl — is a joint scientific project between the European Bioinformatics Institute and the Wellcome Trust Sanger Institute, which was launched in 1999 in response to the imminent completion of the Human Genome Project. Its aim is to provide a… …   Wikipedia History of virtual learning environments 1990s — In the history of virtual learning environments, the 1990s was a time of growth, primarily due to advent of the affordable computer and of the Internet.1990s1990* Formal Systems Inc. of Princeton, NJ, USA introduces a DOS based Assessment… …   Wikipedia 18+ © Academic, 2000-2024 Contact us: Technical Support, Advertising Dictionaries export, created on PHP, Joomla, Drupal, WordPress, MODx. Mark and share Search through all dictionaries Translate… Search Internet Share the article and excerpts Direct link … Do a right-click on the link above and select “Copy Link”