Anthrax toxin

Anthrax toxin refers to three proteins secreted by virulent strains of the bacterium "Bacillus anthracis". These three proteins act together in a synergistic way in which they are endocytosed and translocated into the cytoplasm of a macrophage, where it disrupts cellular signaling and induces cell death, allowing the bacteria to evade the immune system.

The disease known as anthrax is caused by "Bacillus anthracis", a spore-forming bacterium whose pathogenesis is primarily the result of a tripartite toxin. This toxin is composed of three proteins: the protective antigen (PA), the edema factor (EF) and the lethal factor (LF). These proteins work together to enter a cell and disrupt the signaling pathways, eventually leading to apoptosis. The molecular actions of PA, EF, and LF also provide a model biochemical system that demonstrates a variety of structure-function relationships seen in biochemistry.

Virulence factors of "Bacillus anthracis"

Anthrax is a disease caused by "Bacillus anthracis", a spore-forming, Gram positive, rod-shaped bacterium (Fig. 1). Its mode of host infection is through cuts, inhalation, or consumption of infected meats. The lethality of this bacterium is due to two virulent factors: its anti-phagocytic polysaccharide capsule (which prevents the cells of the immune system from killing the bacteria) and its secretion of the anthrax toxin (which is cytotoxic to macrophages primarily). The toxin is a mixture of three proteins: protective antigen (PA), edema factor (EF), and lethal factor (LF). The two virulent enzymes, EF and LF, depend on PA, which acts as a Trojan Horse to carry them through the plasma membrane into the cell where they can make their attack.

Molecular action of anthrax toxin

The three proteins of the anthrax toxin depend on each other for their toxic effect. Each protein is nontoxic on its own, but when combined, these proteins produce the lethal symptoms of anthrax. When injected in laboratory animals, the combination of EF and LF shows no effect. The combination of PA and EF, however, cause local edema, and PA mixed with LF rapidly leads to death. These studies show that these proteins work synergistically, where EF and LF depend on the presence of PA for the toxic effect.

PA is necessary because both LF and EF function inside cells, but they are too large (90.2 kDa and 88.9 kDa, respectively) to enter via existing channels. Through a series of steps, PA helps to shuttle EF and LF into the cell (Fig. 2). This process starts when the 83 kDa PA (PA83) monomers bind to the largely ubiquitous human tumor endothelium marker-8 (TEM8) or capillary morphogenesis protein 2 (CMG2) receptors [cite journal | author= Sternbach, G. | title=The history of anthrax | journal= J Emerg Med | year= 2003 | volume= 24 | pages= 463–467 | doi=10.1016/S0736-4679(03)00079-9] . Once bound, a 20 kDa N-terminal fragment (PA20) is cleaved off of PA83 by membrane endoproteases from the furin family, exposing binding sites for LF, EF, and other molecules of cleaved PA. [cite journal | author=Abrami L, Reig N, van der Goot FG | title=Anthrax toxin: the long and winding road that leads to the kill | journal= Trends Microbiol | year= 2005 | volume= 13 | pages= 72–78 | doi=10.1016/j.tim.2004.12.004] . Because of this cleavage the remaining 63 kDa portion (PA63) rapidly oligomerizes to form a heptamer pre-pore, [cite journal | author= Green BD, Battisti L, Koehler TM, Throne CB, Ivins BE | title=Demonstration of a capsule plasmid in Bacillus anthracis | journal= Infect Immun | year= 1985 | volume= 49 | pages= 291–297] which then associates with up to three molecules of EF and/or LF. [cite journal | author= Grinberg LM, Abramova FA, Yampolskaya OV, Walker DH, Smith JH | title=Quantitative pathology of inhalational anthrax I: quantitative microscopic findings | journal= Mod Pathol | year= 2001 | volume= 14 | pages= 482–495 | doi=10.1038/modpathol.3880337] The cell then endocytoses the complex and carries it to an acidic compartment, where the low pH causes a conformational change in the PA63 pre-pore that forms a cation-specific channel and allows the EF and LF to enter into the cytosol. [cite journal | author= Friedlander AM, Bhatnagar R, Leppla SH, Johnson L, Singh Y | title=Characterization of macrophage sensitivity and resistance to anthrax lethal toxin | journal= Infect Immun | year= 1993 | volume= 61 | pages= 245–252]

Once in the cytosol, the EF and LF then carry out their respective damage-inducing processes. [cite journal | author= Singh Y, Leppla SH, Bhatnagar R, Friedlander AM. | title=Internalization and processing of Bacillus anthracis lethal toxin by toxin-sensitive and -resistant cells | journal= J Biol Chem | year= 1989 | volume= 264 | pages= 11099–11102] EF acts as a Ca2+ and calmodulin dependent adenylate cyclase that greatly increases the level of cAMP in the cell. This increase in cAMP upsets water homeostasis, severely throws the intracellular signaling pathways off balance, and impairs macrophage function, allowing the bacteria to further evade the immune system. LF also helps the bacteria evade the immune system through killing macrophages. Once in these cells, LF acts as a Zn²⁺-dependent endoprotease that snips off the N-terminus of mitogen-activated protein kinase kinases (MAPKK). This inhibits these kinases by not allowing them to efficiently bind to their substrates, which leads to altered signaling pathways and ultimately to apoptosis. Thus, the synergistic effect of these three proteins leads to cellular death through a cascade of events that allow the proteins to enter the cell and disrupt cellular function.

Extracellular toxin structure-function relationship

The mechanism of anthrax toxin action is the result of the molecular structures of the three toxin proteins in combination with biomolecules of the host cell. The molecular interactions are apparent upon performing a detailed analysis of the structures of PA, EF, LF, and the cellular receptors. Structures for the toxin molecules (Figs. 3–5),,, the receptor,, and for the complexes of the molecules all provided insight on the synergistic actions of these proteins. Analyses on binding sites and conformational changes augmented the structural studies, elucidating the functions of each domain of PA, LF, and EF, as briefly outlined in Table 1.

The structure of PA was the first to be determined (Fig. 3).Petosa, C.; Collier, R. J.; Klimpel, K. R.; Leppla, S. H.; Liddington, R. C. Crystal structure of the anthrax toxin protective antigen. Nature. 1997, 385, 833–838.] This structure and that of its cellular receptor shed much light on the specificity of recognition and binding. [ Lacy, D. B.; Wigelsworth, D. J.; Scobie, H. M.; Young, J. A.; Collier, R. J. Crystal structure of the von Willebrand factor A domain of human capillary morphogenesis protein 2: an anthrax toxin receptor. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 6367–6372.] This specificity of PA and the receptor CMG2 (similar to type I integins) is due to interactions through a metal ion dependent adhesion site (MIDAS), a hydrophobic groove, and a β-hairpin projection. These all contribute to a tight interaction in which much protein surface area on CGM2 (and TEM8) is buried.Santelli, E.; Bankston, L. A.; Leppla, S. H.; Liddington, R. C. Crystal structure of a complex between anthrax toxin and its host cell receptor. Nature. 2004, 430, 905–908.]

Petosa et al.solved the structure of a PA63 heptamer at 4.5 Å (0.45 nm) (Fig. 6). The structure they solved was of a non-membrane bound pre-pore, the conformation of the heptamer before the complex extends a β-barrel through the plasma membrane to shuttle the LF and EF into the cytosol.

Heptamerization and pore formation is sterically hindered by the PA20 fragment, but when it is removed from the top of the monomer, the pre-pore is quickly formed. The heptamer formation causes no major changes in the conformation of each individual monomer, but by coming together, more than 15400 Ų (154 nm²) of protein surface is buried. This buried surface consists mostly of polar or charged side groups from domains 1 and 2.

During the heptamerization of PA63, molecules of EF and/or LF rapidly and simultaneously bind to the heptamer pre-pore. This binding occurs because after removing the PA20 domain, a large site is uncovered on domain 1 of PA63. Domain 1 provides a large surface that the interacts with the N-terminus of EF and LF, which is almost completely homologous for the first ~36 residues and similar in tertiary structure for the first ~250 residues. [Pannifer, A. D.; Wong, T. Y.; Schwarzenbacher, R.; Renatus, M.; Petosa, C.; Bienkowska, J.; Lacy, D. B.; Collier, R. J.; Park, S.; Leppla, S. H.; Hanna, P.; Liddington, R. C. Crystal structure of the anthrax lethal factor. Nature. 2001, 414, 230–233.] Studies on the binding region of LF and EF demonstrated that a large surface area contacts with domain 1 of two adjacent PA63 molecules when in the heptamer conformation. [Melnyk, R. A.; Hewitt, K. M.; Lacy, D. B.; Lin, H. C.; Gessner, C. R.; Li, S.; Woods, V. L.; Collier, R. J. Structural Determinates for the Binding of Anthrax Lethal Factor to Oligomeric Protective Antigen. J. Biol. Chem. 2006, 281, 1630–1635.] This large binding area explains why previous studies could only bind up to three molecules on a PA63 heptamer. The LF/EF binding site is now being utilized for delivery of therapeutics via fusion proteins.

Upon formation of the prepore and attachment of LF and/or EF, the heptamer migrates to a lipid raft where it is rapidly endocytosed. Endocytosis occurs as a result of a series of events. This begins when CGM2 or TEM8 is palmitoylated, which inhibits the association of the receptor with lipid rafts. This inhibits the receptor from being endocytosed before PA83 is cleaved and before LF or EF can associate with the heptamer. Reassociation of the receptor with the cholesterol and glycosphigolipid-rich microdomains (lipid rafts) occurs when PA63 binds to the receptor and heptamerizes. Once the receptor and PA returns to the lipid raft, E3 ubiquitin ligase Cb1 ubiquitinates the cytoplasmic tail of the receptor, signaling the receptor and associated toxin proteins for endocytosis. Dynamin and Eps15 are required for this endocytosis to occur, indicating that anthrax toxin enters the cell via the clathrin-dependent pathway. [Abrami, L.; Liu, S.; Cosson, P.; Leppla, S. H.; van der Goot, F. G. Anthrax toxin triggers endocytosis of its receptor via a lipid raft-mediated clathrin-dependent process. J. Cell Biol. 2003, 160, 321–328.]

As discussed, each molecule interacts with several others in order to induce the endocytosis of the anthrax toxin. Once inside, the complex is transferred to an acidic compartment, where the heptamer, still in the non-membrane-spanning pre-pore conformation, is prepared for translocation of EF and LF into the cytosol. [Mourez, M. Anthrax toxins. Rev. Physiol. Biochem. Pharmacol. 2004, 152, 135–164.]

Structure-function relationship from vesicle to cytosol

Pore formation

At first glance, the primary sequence of PA does not look like that of a membrane-spanning protein. A hydrophobicity plot lacked any patterns which are common to possible membrane-spanning domains. The structures of other multimeric membrane proteins (such as diphtheria toxin) provide the answer to how PA manages to span the membrane. It is thought that PA acts like these multimeric membrane proteins that form β-barrels made from stretchs of both polar and non-polar amino acids from each monomer.

The formation of the β-barrel pore is facilitated with a drop in pH. To form the barrel when the pH drops, PA63 domain 2 must undergo the greatest conformation change. Upon examination of the structure of domain 2 (Fig. 7), one can see that this domain contains a Greek-key motif (the gold portion in Fig. 7). A general schematic of a Greek-key motif is shown in Fig. 8. Attached to the Greek key in domain 2 is a large disordered loop. The necessity of this loop in pore formation is shown through using mutagenesis and proteolysis of the loop with chymotrypsin. Additional electrophysiological measurements of cysteine substitutions place the amino acids of this loop inside the lumen of the membrane inserted pore. The disordered loop in domain 2 also has a pattern of alternating hydrophobic and hydrophilic amino acids, which is a pattern conserved in the membrane-spanning portions of porins. The only problem is that the loop is not large enough to span a membrane in a β-barrel. This membrane insertion could only occur with additional conformational changes. A large conformational change does takes place where the Greek-key motif unfolds, forming a β-hairpin that projects downward into the membrane and forms a β-barrel with the other 6 monomers of the complex (figures 9a and 9b). The final pore has a diameter of 12 Å (1.2 nm), which fits the theoretical value of this model.

This model would require large conformational changes in domain 2 along with the breaking of many hydrogen bonds as the Greek-key motif peels away from the center of the domain. Petosa et al. proposed a model of how this occurs. Insertion of the PA Greek key motifs into the membrane occurs when the heptamer is acidified. On artificial bilayers, this occurs when the pH is dropped from 7.4 to 6.5, suggesting that the trigger for insertion involves a titration of histidines. This indeed fits the sequence of PA since domain 2 contains a number of histidines (shown as asterisks in figure 9a). Three histidine residues are found in the disordered loop, one of which lies with a Greek-key histidine within a cluster of polar amino acids. This cluster (including the two histidines, three arginines and one glutamate) is embedded at the top of the Greek-key motif, so it is easy to see that the protonation of these histidines would disrupt the cluster. Furthermore, another histidine is located at the base of the Greek-key motif along with a number of hydrophobic residues (on the green segment in figures 7 and 9a). At pH 7.4 this segment is ordered, but when the crystals are grown at pH 6.0, it becomes disordered. This order to disorder transition is the initial step of PA membrane insertion.

PA is endocytosed as a soluble heptamer attached to its receptors, with LF or EF attached to the heptamer as cargo. The first step after endocytosis is the acidification of the endocytotic vesicle. The acidification plays two roles in the lifespan of the toxin. First, it helps to relax the tight grip of the CMG2 or TEM8 receptor on PA, facilitating the pore formation (the different receptors allow for insertion at a slightly different pH). Second, the drop in pH causes a disordered loop and a Greek-key motif in the PA domain 2 to fold out of the heptamer pre-pore and insert through the wall of the acidic vesicle, leading to pore formation (Figures 7–9).

Santelli et al. explained more about the process after they determined the crystal structure of the PA/CMG2 complex. The structure of this complex shows the binding of CMG2 by both domain 2 and 4 of PA. This interaction demonstrates less freedom to unfold the Greek key. Further analysis shows that seven of the nine histidines in PA are on the domain 2/domain 4 interface. Protonation of these histidines causes the domains to separate enough to allow the Greek-key to flop out and help form the β-hairpin involved in insertion. In addition, when PA binds to CMG2, insertion no longer occurs at a pH of 6.5, as it does when inserted into an artificial membrane. Instead it requires a pH of 5.0 for insertion in natural cells. This difference was explained to be the result of the pocket next to the MIDAS motif in CMG2. This pocket contains a histidine buried at the bottom where domain 2 attaches. This histidine is protonated at a lower pH and adds greater stability to PA. This added stability keeps the Greek-key from being able to move until more acidic conditions are met. These histidines all work in conjunction to keep the heptamer from inserting prematurely before endocytosis occurs.

Santelli and colleagues (Fig. 10) also built a hypothetical structure of the membrane-inserted PA/CMG2 structure. This model shows that the β-barrel is about 70 Å (7 nm) long, 30 Å (3 nm) of which span the membrane and the 40 Å (4 nm) gap is actually filled in with the rest of the extracellular portion of the CMG2 receptor (~100 residues). CMG2 provides additional support to the pore.

Protein translocation

Several recent studies demonstrate how the PA63 pore allows the EF and LF into the cytoplasm when its lumen is so small. The lumen on the PA63 pore is only 15 Å (1.5 nm) across, which is much smaller than the diameter of LF or EF. Translocation occurs through a series of events which begin in the endosome as it acidifies. LF and EF are pH sensitive, and as the pH drops, their structures lose stability. Below a pH of 6.0 (the pH in an endosome), both LF and EF become disordered molten globules. When a molecule is in this conformation, the N-terminus is freed and drawn into the pore by the proton gradient and positive transmembrane potential. A ring of seven phenylalanines at the mouth endosome side of the pore (phenylalanine clamp) assists in the unfolding of LF or EF by interacting with the hydrophobic residues found in LF or EF. The proton gradient then begins to lace the protein though the pore. The lacing mechanism is driven by the gradient, but requires the phenylalanine clamp for a ratcheting motion. The first 250 residues of EF and LF have an irregular alternating sequence of basic, acidic, and hydrophobic residues. The interplay between the phenylalanine clamp and the protonation state cause a ratcheting effect that drives the protein though until enough has crossed into the cytoplasm to drag the rest through the pore as the N-terminus refolds (Fig. 11).

Questions for Future Research

Despite the recent advances in the understanding of anthrax toxin, there are still several missing details in the action of anthrax toxin. These missing details leave questions about the molecular actions inside the cell.2 What role does EF play in hindering the immune system? Does it work with LF for its effect? How do the enzymes refold after translocation? Is there a chaperonin? Two proteins: Kif1C and the proteasome have shown a contribution to the effect of lethal toxin, but how do they contribute? Does LF target certain MAPKKs with a greater specificity? Does LF target other molecules too?

References

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