Haplogroup Q (Y-DNA)

Infobox haplogroup
name =Q


origin-date =15,000 to 20,000 BC
origin-place =Ural or Siberia
ancestor =P
descendants =
mutations =M242
members =Selkups (~70%) and Kets (~95%)In human genetics, Haplogroup Q (M242) is a Y-chromosome DNA haplogroup.

Haplogroup Q is a branch of haplogroup P (M45). It is believed to have arisen in Siberia approximately 15,000 to 20,000 years ago.

This haplogroup contains the patrilineal ancestors of many Siberians, Central Asians, and indigenous peoples of the Americas. Haplogroup Q Y-chromosomes are also found scattered at a low frequency throughout Eurasia. [ [http://mbe.oxfordjournals.org/cgi/reprint/21/1/164.pdf High-Resolution SNPs and Microsatellite Haplotypes Point to a Single, Recent Entry of Native American Y Chromosomes into the Americas] , Stephen L. Zegura, Tatiana M. Karafet et al., 2003] This haplogroup is diverse despite its low frequency among most populations outside of Siberia or the Americas, and at least six primary subclades have been sampled and identified in modern populations.

Origins

A migration from Asia into Alaska across the Bering Strait was done by haplogroup Q populations approximately 15,000 years ago. This founding population spread throughout the Americas. In the Americas, a member of the founding population underwent a mutation, producing its descendant population defined by the M3 single nucleotide polymorphism (SNP).

Discovery of ancestral Q in the Indian subcontinent

A Biomed study observed an ancestral state Q* and a novel sub-branch Q5, not reported elsewhere, in Indian subcontinent, though in low frequency [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 BMC Evol Biol. 2007; 7: 232] . A novel subgroup Q4 was identified recently which is also restricted to Indian subcontinent. The most plausible explanation for these observations could be an ancestral migration of individuals bearing ancestral lineage Q* to Indian subcontinent followed by an autochthonous differentiation to Q4 and Q5 sublineages later on. Thus the subcontinent has three novel Q lineages, an ancestral Q* (different from the Central Asian Q*), Q4 and Q5 unique to the subcontinent.However, the recent ISOGG tree lacks the representation of Q5 (defined by ss4 bp, rs41352448) [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 BMC Evol Biol. 2007; 7: 232] . Y-Haplogroup Q4 is shown as Q1a3 (defined by M346) in the recent ISOGG tree. Taking the relationship of Q4 (M346) and Q5 (ss4bp) into consideration [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 BMC Evol Biol. 2007; 7: 232] Q5 may be positioned as Q1a7.

Technical specification of mutation

The technical details of M242 are:

:Nucleotide change: C to T:Position (base pair): 180:Total size (base pairs): 366:Forward 5′→ 3′: aactcttgataaaccgtgctg:Reverse 5′→ 3′: tccaatctcaattcatgcctc

Distribution

In the Old World the Q lineage and its many branches is largely found within a huge triangle defined by Norway in the West, Iran in the South and Mongolia in the East. There is also a rough correlation between the Turkic-speaking peoples of Central Eurasia and Q. The frequency of Q in Norway and Mongolia is about 4% while in the Iranian cities of Shiraz and Esfahan, the frequency runs between 6% and 8%; Iranian samples of haplogroup Q belong almost exclusively to the M25 defined subclade. In the middle of this triangle, in Uzbekistan and Turkmenistan, the frequency of Q runs between 10% and 14%.Fact|date=September 2008 Haplogroup Q is found in approximately 2% of males in Turkey and Lebanon.Cengiz Cinnioğlu, Roy King, Toomas Kivisild, Ersi Kalfoğlu, Sevil Atasoy, Gianpiero L. Cavalleri, Anita S. Lillie, Charles C. Roseman, Alice A. Lin, Kristina Prince, Peter J. Oefner, Peidong Shen, Ornella Semino, L. Luca Cavalli-Sforza, and Peter A. Underhill, "Excavating Y-chromosome haplotype strata in Anatolia," "Hum Genet" (2004) 114 : 127–148, DOI 10.1007/s00439-003-1031-4.] Pierre A. Zalloua, Yali Xue, Jade Khalife, Nadine Makhoul, Labib Debiane, Daniel E. Platt, Ajay K. Royyuru, Rene J. Herrera, David F. Soria Hernanz, Jason Blue-Smith, R. Spencer Wells, David Comas, Jaume Bertranpetit, Chris Tyler-Smith, and The Genographic Consortium, "Y-Chromosomal Diversity in LebanonIs Structured by Recent Historical Events," "The American Journal of Human Genetics" 82, 873–882, April 2008.] Only two groups in the Old World are majority Q groups. These are the Selkups (~70%) and Kets (~95%). They live in western and middle Siberia and are small in number, being just under 5,000 and 1,500, respectively.

Subgroups

The subclades of Haplogroup Q with their defining mutation(s), according to [http://www.isogg.org/tree/ the 2008 ISOGG tree] are provided below. Subclade Q1a7 (ss4 bp, rs41352448) is not represented in ISOGG 2008 tree but has been found as a novel Q lineage (Q5) in indian populations http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 BMC Evol Biol 2007. The 2008 ISOGG tree, along with Q5(ss4 bp, rs41352448) that may be represented as Q1a7

*Q (M242)
**Q*
**Q1 (P36.2)
***Q1*
***Q1a (MEH2)
****Q1a*
****Q1a1 (M120, M265/N14) "Found at low frequency among Chinese, Koreans, Dungans, and Hazara" [ [http://www.nature.com/nature/journal/v431/n7006/extref/nature02878-s2.doc Supplementary Table 2: NRY haplogroup distribution in Han populations] , from the online supplementary material for [http://www.nature.com/nature/journal/v431/n7006/abs/nature02878.html the article] by Bo Wen et al., "Genetic evidence supports demic diffusion of Han culture," "Nature" 431, 302-305 (16 September 2004)] [ [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=56946&rendertype=table&id=T1 Table 1: Y-chromosome haplotype frequencies in 49 Eurasian populations, listed according to geographic region] , from [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=56946 the article] by R. Spencer Wells et al., "The Eurasian Heartland: A continental perspective on Y-chromosome diversity," Proceedings of the National Academy of Sciences of the United States of America (August 28, 2001)]
****Q1a2 (M25, M143) "Found at low to moderate frequency among some populations of Southwest Asia, Central Asia, and Siberia"
****Q1a3 (M346)
*****Q1a3* "Found at low frequency in Pakistan and India"
*****Q1a3a (M3) "Typical of indigenous peoples of the Americas"
******Q1a3a*
******Q1a3a1 (M19) "Found among some indigenous peoples of South America, such as the Ticuna and the Wayuu" [ [http://www.ucl.ac.uk/tcga/tcgapdf/Bortolini-AJHG-03-YAmer.pdf "Y-Chromosome Evidence for Differing Ancient Demographic Histories in the Americas,"] Maria-Catira Bortolini et al., "American Journal of Human Genetics" 73:524-539, 2003]
******Q1a3a2 (M194)
******Q1a3a3 (M199, P106, P292)
****Q1a4 (P48)
****Q1a5 (P89)
****Q1a6 (M323) "Found in a significant minority of Yemeni Jews"
****Q1a7 (ss4 bp, rs41352448) "Presently found exclusively in Indian populations [ [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 A novel subgroup Q5 of human Y-chromosomal haplogroup Q in India BMC Evol Biol. 2007; 7: 232.] ]
***Q1b (M378) "Found at low frequency among samples of Hazara and Sindhis"

References

External links

* [http://www.qydna.org Q Y-Haplogroup Project]
* [http://www.familytreedna.com/public/Amerind%20Y/index.aspx?fixed_columns=on American Indian Q3 project at FTDNA]
* [https://www3.nationalgeographic.com/genographic/atlas.html?card=my045 Spread of Haplogroup Q] , from The Genographic Project, "National Geographic"
* [http://www.familytreedna.com/public/india The India Genealogical DNA Project]
* [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2258157 Pubmed Central]

ee also

*Populations
**Hazara
**Selkups
**Ticuna
**Indian populations

*Genetics
**Haplogroup
**Haplotype
**subclade