List of sequence alignment software
- List of sequence alignment software
This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.
Database search only
Genomics analysis
Alignment Viewers/Editors
Some useful discussions on sequence alignment editors/viewers can be found here:
* http://lists.open-bio.org/pipermail/emboss/2008-July/003324.html
hort-Read Sequence Alignment
External links
* [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14736341 Pollard et al. (2004)] "(PubMed Central free fulltext)": The authors discuss LAGAN, CHAOS, and Dialign as the most effective tools tested for certain uses.
Wikimedia Foundation.
2010.
Look at other dictionaries:
Sequence alignment — In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences.[1]… … Wikipedia
Structural alignment software — This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment.tructural comparison and alignmentKey * Cα Backbone Atom (Cα) … Wikipedia
List of phylogenetics software — This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics, cladistics, and bioinformatics. Methods for estimating… … Wikipedia
List of file formats — This is an incomplete list, which may never be able to satisfy particular standards for completeness. You can help by expanding it with reliably sourced entries. See also: List of file formats (alphabetical) This is a list of file formats… … Wikipedia
List of bioinformatics companies — The primary purpose of this list is to serve as a holding place for the identities of Bioinformatics companies, particularly those for which articles have not yet been created. Three elements would be useful to include: a link to the article, a… … Wikipedia
Sequence assembly — In bioinformatics, sequence assembly refers to aligning and merging fragments of a much longer DNA sequence in order to reconstruct the original sequence. This is needed as DNA sequencing technology cannot read whole genomes in one go, but rather … Wikipedia
Structural alignment — is a form of sequence alignment based on comparison of shape. These alignments attempt to establish equivalences between two or more polymer structures based on their shape and three dimensional conformation. This process is usually applied to… … Wikipedia
Software tools for molecular microscopy — There are a large number of software tools or software applications that have been specifically developed for the field sometimes referred to as molecular microscopy or cryo electron microscopy or cryoEM. Several special issues of the Journal of… … Wikipedia
List of important publications in computer science — This is a list of important publications in computer science, organized by field. Some reasons why a particular publication might be regarded as important: Topic creator – A publication that created a new topic Breakthrough – A publication that… … Wikipedia
sequence analysis — A series of questions about how social processes are ordered, either temporally or spatially, together with the techniques for answering these. Many areas of sociology are concerned with events or actions in their temporal context or with what we … Dictionary of sociology
