BioPAX

BioPAX

Biological Pathway Exchange (BioPAX) is an RDF/OWL-based standard for the exchange of biological pathways. It is supported by a variety of online databases (e.g. Reactome) and tools. The latest released version is BioPAX Level 2. There is a release candidate for Level 3, as well as an effort to create a version of BioPAX as part of OBO.

BioPAX Level 2 Support

Databases with BioPAX Export

Online databases offering BioPAX Level 2 export include:

* [http://reactome.org Reactome]
* [http://biocyc.org BioCyc]
* [http://inoh.org INOH]
* [http://biomodels.org BioModels]
* [http://pid.nci.nih.gov/PID/index.shtml Nature/NCI Pathway Interaction Database]
* [http://cancer.cellmap.org Cancer Cell Map]
* [http://pathwaycommons.org Pathway Commons]

oftware

Software supporting BioPAX Level 2 include:

* [http://sourceforge.net/projects/biopax Paxtools] , a Java API for handling BioPAX files
* [http://vcell.org/biopax Systems Biology Linker (Sybil)] , an application for visualizing BioPAX and converting BioPAX to SBML, as part of the [http://vcell.org Virtual Cell] .

External Links

* [http://www.biopaxwiki.org BioPAX homepage]


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