Inparanoid

INPARANOID is an algorithm which finds orthologous genes and those paralogous genes which arose--most likely by duplication--after some speciation event. Such protein-coding genes are called "in-paralogs", as opposed to "out-paralogs" (which arose prior to the species split).Cite journal
doi = 10.1006/jmbi.2000.5197
year = 2001
volume = 314
issue = 5
pages = 1041-1052
last = Remm
first = Maido
coauthors = Christian E.V. Storm, Erik L.L. Sonnhammer
title = Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
journal = Journal of Molecular Biology
accessdate = 2008-06-05
url = http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45M7TB0-5T&_user=108429&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000059713&_version=1&_urlVersion=0&_userid=108429&md5=8bd46f04d1b47331c57a3c423b718a67]

Inparanoid (with varying capitalization) may refer to the program which utilizes the INPARANOID algorithm as well as the derived database; this database lists orthologous clusters of genes.cite journal
author = O'Brien, K.P.
coauthors = Remm, M.; Sonnhammer, E.L.L.
year = 2005
title = Inparanoid: a comprehensive database of eukaryotic orthologs
journal = Nucleic Acids Research
volume = 33
issue = Database Issue
pages = D476
accessdate = 2008-06-05
url = http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D476
doi = 10.1093/nar/gki107]

External Links

* [http://inparanoid.sbc.su.se/cgi-bin/index.cgi InParanoid]

See also

* BLAST
* Proteomics

References