Janin Plot

Janin Plot

A Janin plot is like the Ramachandran plot a way to visualize dihedral angles. Whereas the later relates the two backbone dihedral angles, this plot relates the first side chain dihedrals χ-1 against χ-2 for those amino acid residues in protein structure that have them. This is an important correlation that is different for the different amino acids and can depend on the secondary structure type (Helix, Sheet, etc.) that the residue is in. This plot, is named for J. Janin who studied these correlations in 1978.

References

* Janin et al. Conformation of amino acid side-chains in proteins. J Mol Biol (1978) PMID 731698


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