Anders Krogh

Anders Krogh is professor in bioinformatics at the university of Copenhagen, where he leads the university's bioinformatics center. He is well known for his pioneering work on the use of hidden Markov models in bioinformatics (together with David Haussler)cite journal |author=Krogh A, Brown M, Mian IS, Sjölander K, Haussler D |title=Hidden Markov models in computational biology. Applications to protein modeling |journal=J. Mol. Biol. |volume=235 |issue=5 |pages=1501–31 |year=1994 |pmid=8107089 |doi=10.1006/jmbi.1994.1104] cite journal |author=Krogh A, Mian IS, Haussler D |title=A hidden Markov model that finds genes in E. coli DNA |journal=Nucleic Acids Res. |volume=22 |issue=22 |pages=4768–78 |year=1994 |pmid=7984429 |doi=10.1093/nar/22.22.4768] cite journal |author=Sjölander K, Karplus K, Brown M, "et al" |title=Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology |journal=Comput. Appl. Biosci. |volume=12 |issue=4 |pages=327–45 |year=1996 |pmid=8902360] , and is co-author of a widely used textbook in bioinformatics [Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. (1999) Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison, Cambridge University Press] . In addition, he also co-authored one of the early textbooks on neural networks [Introduction to the Theory of Neural Computation (Santa Fe Institute Studies in the Sciences of Complexity). (1991) John A. Hertz, Richard G. Palmer, Anders Krogh, Westview Press] . His current research interests include promotor analysiscite journal |author=Marstrand TT, Frellsen J, Moltke I, "et al" |title=As
] cite journal |author=Frith MC, Valen E, Krogh A, Hayashizaki Y, Carninci P, Sandelin A |title=A code for transcription initiation in mammalian genomes |journal=Genome Res. |volume=18 |issue=1 |pages=1–12 |year=2008 |pmid=18032727 |doi=10.1101/gr.6831208] cite journal |author=Bryne JC, Valen E, Tang MH, "et al" |title=JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update |journal=Nucleic Acids Res. |volume=36 |issue=Database issue |pages=D102–6 |year=2008 |pmid=18006571 |doi=10.1093/nar/gkm955] , non-coding RNAcite journal |author=Lindow M, Jacobsen A, Nygaard S, Mang Y, Krogh A |title=Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants |journal=PLoS Comput. Biol. |volume=3 |issue=11 |pages=e238 |year=2007 |pmid=18052543 |doi=10.1371/journal.pcbi.0030238] cite journal |author=Lindgreen S, Gardner PP, Krogh A |title=MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing |journal=Bioinformatics |volume=23 |issue=24 |pages=3304–11 |year=2007 |pmid=18006551 |doi=10.1093/bioinformatics/btm525] cite journal |author=Lindgreen S, Gardner PP, Krogh A |title=Measuring covariation in RNA alignments: physical realism improves information measures |journal=Bioinformatics |volume=22 |issue=24 |pages=2988–95 |year=2006 |pmid=17038338 |doi=10.1093/bioinformatics/btl514] , gene predictioncite journal |author=Munch K, Krogh A |title=Automatic generation of gene finders for eukaryotic species |journal=BMC Bioinformatics |volume=7 |issue= |pages=263 |year=2006 |pmid=16712739 |doi=10.1186/1471-2105-7-263] cite journal |author=Munch K, Gardner PP, Arctander P, Krogh A |title=A hidden Markov model approach for determining expression from genomic tiling micro arrays |journal=BMC Bioinformatics |volume=7 |issue= |pages=239 |year=2006 |pmid=16672042 |doi=10.1186/1471-2105-7-239] cite journal |author=Nielsen P, Krogh A |title=Large-scale prokaryotic gene prediction and comparison to genome annotation |journal=Bioinformatics |volume=21 |issue=24 |pages=4322–9 |year=2005 |pmid=16249266 |doi=10.1093/bioinformatics/bti701] and protein structure predictioncite journal |author=Won KJ, Hamelryck T, Prügel-Bennett A, Krogh A |title=An evolutionary method for learning HMM structure: prediction of protein secondary structure |journal=BMC Bioinformatics |volume=8 |issue= |pages=357 |year=2007 |pmid=17888163 |doi=10.1186/1471-2105-8-357] cite journal |author=Hamelryck T, Kent JT, Krogh A |title=Sampling realistic protein conformations using local structural bias |journal=PLoS Comput. Biol. |volume=2 |issue=9 |pages=e131 |year=2006 |pmid=17002495 |doi=10.1371/journal.pcbi.0020131] .

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