TDP1

Tyrosyl-DNA phosphodiesterase 1, also known as TDP1, is a human gene.cite web | title = Entrez Gene: TDP1 tyrosyl-DNA phosphodiesterase 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=55775| accessdate = ]

PBB_Summary
section_title =
summary_text = The protein encoded by this gene is involved in repairing stalled topoisomerase I-DNA complexes by catalyzing the hydrolysis of the phosphodiester bond between the tyrosine residue of topoisomerase I and the 3-prime phosphate of DNA. This protein may also remove glycolate from single-stranded DNA containing 3-prime phosphoglycolate, suggesting a role in repair of free-radical mediated DNA double-strand breaks. This gene is a member of the phospholipase D family and contains two PLD phosphodiesterase domains. Mutations in this gene are associated with the disease spinocerebellar ataxia with axonal neuropathy (SCAN1). While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode the same isoform.cite web | title = Entrez Gene: TDP1 tyrosyl-DNA phosphodiesterase 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=55775| accessdate = ]

References

Further reading

PBB_Further_reading
citations =
*cite journal | author=El-Khamisy SF, Caldecott KW |title=TDP1-dependent DNA single-strand break repair and neurodegeneration. |journal=Mutagenesis |volume=21 |issue= 4 |pages= 219–24 |year= 2007 |pmid= 16775218 |doi= 10.1093/mutage/gel024
*cite journal | author=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery. |journal=Genome Res. |volume=6 |issue= 9 |pages= 791–806 |year= 1997 |pmid= 8889548 |doi=
*cite journal | author=Pouliot JJ, Yao KC, Robertson CA, Nash HA |title=Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes. |journal=Science |volume=286 |issue= 5439 |pages= 552–5 |year= 1999 |pmid= 10521354 |doi=
*cite journal | author=Interthal H, Pouliot JJ, Champoux JJ |title=The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=98 |issue= 21 |pages= 12009–14 |year= 2001 |pmid= 11572945 |doi= 10.1073/pnas.211429198
*cite journal | author=Davies DR, Interthal H, Champoux JJ, Hol WG |title=The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. |journal=Structure |volume=10 |issue= 2 |pages= 237–48 |year= 2002 |pmid= 11839309 |doi=
*cite journal | author=Inamdar KV, Pouliot JJ, Zhou T, "et al." |title=Conversion of phosphoglycolate to phosphate termini on 3' overhangs of DNA double strand breaks by the human tyrosyl-DNA phosphodiesterase hTdp1. |journal=J. Biol. Chem. |volume=277 |issue= 30 |pages= 27162–8 |year= 2002 |pmid= 12023295 |doi= 10.1074/jbc.M204688200
*cite journal | author=Takashima H, Boerkoel CF, John J, "et al." |title=Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. |journal=Nat. Genet. |volume=32 |issue= 2 |pages= 267–72 |year= 2002 |pmid= 12244316 |doi= 10.1038/ng987
*cite journal | author=Davies DR, Interthal H, Champoux JJ, Hol WG |title=Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures. |journal=J. Mol. Biol. |volume=324 |issue= 5 |pages= 917–32 |year= 2003 |pmid= 12470949 |doi=
*cite journal | author=Strausberg RL, Feingold EA, Grouse LH, "et al." |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899
*cite journal | author=Heilig R, Eckenberg R, Petit JL, "et al." |title=The DNA sequence and analysis of human chromosome 14. |journal=Nature |volume=421 |issue= 6923 |pages= 601–7 |year= 2003 |pmid= 12508121 |doi= 10.1038/nature01348
*cite journal | author=Davies DR, Interthal H, Champoux JJ, Hol WG |title=Crystal structure of a transition state mimic for Tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide. |journal=Chem. Biol. |volume=10 |issue= 2 |pages= 139–47 |year= 2003 |pmid= 12618186 |doi=
*cite journal | author=Ota T, Suzuki Y, Nishikawa T, "et al." |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285
*cite journal | author=Davies DR, Interthal H, Champoux JJ, Hol WG |title=Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes. |journal=J. Med. Chem. |volume=47 |issue= 4 |pages= 829–37 |year= 2004 |pmid= 14761185 |doi= 10.1021/jm030487x
*cite journal | author=Raymond AC, Rideout MC, Staker B, "et al." |title=Analysis of human tyrosyl-DNA phosphodiesterase I catalytic residues. |journal=J. Mol. Biol. |volume=338 |issue= 5 |pages= 895–906 |year= 2004 |pmid= 15111055 |doi= 10.1016/j.jmb.2004.03.013
*cite journal | author=Yang M, Kirley TL |title=Site-directed mutagenesis of human soluble calcium-activated nucleotidase 1 (hSCAN-1): identification of residues essential for enzyme activity and the Ca(2+)-induced conformational change. |journal=Biochemistry |volume=43 |issue= 28 |pages= 9185–94 |year= 2004 |pmid= 15248776 |doi= 10.1021/bi049565o
*cite journal | author=Gerhard DS, Wagner L, Feingold EA, "et al." |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504
*cite journal | author=Barthelmes HU, Habermeyer M, Christensen MO, "et al." |title=TDP1 overexpression in human cells counteracts DNA damage mediated by topoisomerases I and II. |journal=J. Biol. Chem. |volume=279 |issue= 53 |pages= 55618–25 |year= 2005 |pmid= 15494395 |doi= 10.1074/jbc.M405042200
*cite journal | author=Zhou T, Lee JW, Tatavarthi H, "et al." |title=Deficiency in 3'-phosphoglycolate processing in human cells with a hereditary mutation in tyrosyl-DNA phosphodiesterase (TDP1). |journal=Nucleic Acids Res. |volume=33 |issue= 1 |pages= 289–97 |year= 2005 |pmid= 15647511 |doi= 10.1093/nar/gki170
*cite journal | author=El-Khamisy SF, Saifi GM, Weinfeld M, "et al." |title=Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1. |journal=Nature |volume=434 |issue= 7029 |pages= 108–13 |year= 2005 |pmid= 15744309 |doi= 10.1038/nature03314
*cite journal | author=Raymond AC, Staker BL, Burgin AB |title=Substrate specificity of tyrosyl-DNA phosphodiesterase I (Tdp1). |journal=J. Biol. Chem. |volume=280 |issue= 23 |pages= 22029–35 |year= 2005 |pmid= 15811850 |doi= 10.1074/jbc.M502148200

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