- Anfinsen's dogma
Anfinsen's dogma (also known as the "thermodynamic hypothesis") is a postulate in
molecular biology championed by theNobel prize laureateChristian B. Anfinsen . The dogma states that, at least for small globular proteins, the native structure is determined only by the protein'samino acid sequence. This amounts to say that, at the environmental conditions (temperature, solvent concentration and composition, etc.) at which folding occurs, the native structure is a unique, stable and kinetically accessible minimum of the free energy.The three conditions:
* "uniqueness": Requires that the sequence does not have any other configuration with a comparable free energy. Hence the free energy minimum must be "unchallenged".
* "stability": Small changes in the surrounding environment cannot give rise to changes in the minimum configuration. This can be pictured as a free energy surface that looks rather like a coffee cup (with the native state in the bottom of it) than like a soup plate; the free energy surface around the native state must be rather steep and high, in order to provide stability.
* "kinetical accessibility": Means that the path in the free energy surface from the unfolded to the folded state must be reasonably smooth or in other words that the folding of the chain must not involve highly complex changes in the shape (like knots or other high order conformations).How the protein reaches this structure is the subject of the field of
protein folding , that has a related dogma calledLevinthal's paradox . Levinthal's paradox states that the number of possible conformations available to a given protein is astronomically large. Effectively, this makes computational prediction of protein structure by evaluating all possible conformations unfeasible even for relatively small proteins.Also, some proteins need the assistance of another protein called a
chaperone protein to fold properly. It has been suggested that this disproves Anfinsen's dogma. However the chaperones do not appear to affect the final state of the protein, but seems to primarily work by preventing aggregation of several protein molecules before the protein is folded.References
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