- Food microbiology
Food microbiology is the study of the
microorganismswhich inhabit, create or contaminate food. Of major importance is the study of microorganisms causing food spoilage.cite book | author = Fratamico PM and Bayles DO (editor). | title = Foodborne Pathogens: Microbiology and Molecular Biology | publisher = Caister Academic Press | year = 2005 | id = ISBN 978-1-904455-00-4] However "good" bacteria such as probioticsare becoming increasingly important in food science.cite book | author = Tannock GW (editor). | title = Probiotics and Prebiotics: Scientific Aspects | publisher = Caister Academic Press | year = 2005 | id = ISBN 978-1-904455-01-1] cite book |author= Ljungh A, Wadstrom T (editors)| year=2009 |title=Lactobacillus Molecular Biology: From Genomics to Probiotics | publisher=Caister Academic Press | id= ISBN 978-1-904455-41-7] In addition, microorganisms are essential for the production of foods such as cheese, yoghurt, other fermented foods, bread, beer and wine.
Food safetyis a major focus of food microbiology. Pathogenic bacteria, virusesand toxinsproduced by microorganismsare all possible contaminants of food. However, microorganismsand their products can also be used to combat these pathogenic microbes. Probioticbacteria, including those which produce bacteriocinscan kill and inhibit pathogens. Alternatively, purified bacteriocinssuch as nisincan be added directly to food products. Finally, bacteriophage, viruses which only infect bacteria, can be used to kill bacterial pathogens. Thorough preparation of food, including proper cookingwill eliminate most bacteria and viruses. However, toxins produced by contaminants may not be heat-labile, and some will not be eliminated by cooking.
Fermentation is one way microorganisms can change a food.
Yeast, especially "S. cerevisiae", is used to leaven bread, brew beerand make wine. Certain bacteria, including lactic acid bacteria, are used to make yogurt, cheese, hot sauce, pickles and dishes such as kimchi. A common effect of these fermentations is that the food product is less hospitable to other microorganisms, including pathogensand spoilage-causing microorganisms, thus extending the food's shelf-life.
cheesevarieties also require mold microorganismsto ripen and develop their characteristic flavors.
A variety of
biopolymers, such as polysaccharides, polyesters and polyamides, are naturally produced by microorganisms. Several microbially-produced polymers are used in the food industry.cite book | author = Rehm BHA (editor). | title = Microbial Production of Biopolymers and Polymer Precursors: Applications and Perspectives | publisher = Caister Academic Press | year = 2009 | id = ISBN 978-1-904455-36-3]
Plant-pathogenic bacteria of the genus "
Xanthomonas" are able to produce the acidic exopolysaccharide xanthangum. Because of its physical properties, it is widely used as a viscosifer, thickener, emulsifier or stabilizer in the food industry. Xanthan consists of pentasaccharide repeat units composed of D-glucosyl, D-mannosyl, and D-glucuronyl acid residues in a molar ratio of 2:2:1 and variable proportions of O-acetyl and pyruvyl residues.cite book |author=Becker and Vorholter|year=2009|chapter=Xanthan Biosynthesis by Xanthomonas Bacteria: An Overview of the Current Biochemical and Genomic Data|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
Alginateis the main representative of a family of polysaccharides that neither show branching nor repeating blocks or unit patterns and this property distinguishes it from to other polymers like xanthanor dextran. Alginates can be used as thickening agents.cite book |author=Remminghorst and Rehm|year=2009|chapter=Microbial Production of Alginate: Biosynthesis and Applications|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
Celluloseis a simple polysaccharide, in that it consists only of one type of sugar( glucose), and the units are linearly arranged and linked together by β-1,4 linkages only. The mechanism of biosynthesis is however rather complex, partly because in native celluloses the chains are organized as highly ordered water-insoluble fibers. Currently the key genes involved in cellulose biosynthesis and regulation are known in a number of bacteria, but many details of the biochemistry of its biosynthesis are still not clear. In spite of the enormous abundance of cellulose in plants bacterial celluloses are being investigated for industrial exploitations.cite book |author=Valla et al|year=2009|chapter=Bacterial Cellulose Production: Biosynthesis and Applications|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
Poly-γ-glutamic acid (γ-PGA) produced by various strains of "
Bacillus" has potential applications as a thickener in the food industry.cite book |author=Shih and Wu|year=2009|chapter=Biosynthesis and Application of Poly(gamma-glutamic acid)|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
Levan, a homopolysaccharide which is composed of D-fructofuranosyl residues joined by 2,6 with multiple branches by 2,1 linkages has great potential as a functional biopolymer in foods, feeds, cosmetics, and the pharmaceutical and chemical industries. Levan can be used as food or a feed additive with prebiotic and hypocholesterolemic effects.cite book |author=Kang et al|year=2009|chapter=Levan: Applications and Perspectives|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
Microorganisms synthesize a wide spectrum of multifunctional
polysaccharides including intracellular polysaccharides, structural polysaccharides and extracellular polysaccharides or exopolysaccharides (EPS). Exopolysaccharides generally constitute of monosaccharides and some non-carbohydrate substituents (such as acetate, pyruvate, succinate, and phosphate). Owing to the wide diversity in composition, exopolysaccharides have found multifarious applications in various food and pharmaceutical industries.cite book |author=Suresh and Mody|year=2009|chapter=Microbial Exopolysaccharides: Variety and Potential Applications|title=Microbial Production of Biopolymers and Polymer Precursors|publisher=Caister Academic Press|id = ISBN 978-1-904455-36-3]
pathogens are the leading causes of illness and death in less developed countries killing approximately 1.8 million people annually. In developed countries foodborne pathogens are responsible for millions of cases of infectious gastrointestinal diseases each year, costing billions of dollars in medical care and lost productivity. New foodborne pathogens and foodborne diseases are likely to emerge driven by factors such as pathogen evolution, changes in agricultural and food manufacturing practices, and changes to the human host status. There are growing concerns that terrorists could use pathogens to contaminate food and water supplies in attempts to incapacitate thousands of people and disrupt economic growth.cite book | author = Fratamico PM and Bayles DO (editor). | title = Foodborne Pathogens: Microbiology and Molecular Biology | publisher = Caister Academic Press | year = 2005 | id = ISBN 978-1-904455-00-4]
Food and waterborne
viruses contribute to a substantial number of illnesses throughout the world. Among those most commonly known are hepatitisA virus, rotavirus, astrovirus, enteric adenovirus, hepatitis E virus, and the human caliciviruses consisting of the noroviruses and the Sapporo viruses. This diverse group are transmitted by the fecal-oral route, often by ingestion of contaminated food and water.cite book |author=Richards GP|year=2005|chapter=Food- and Waterborne Enteric Viruses |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Protozoan parasites associated with food and water can cause illness in humans. Although parasites are more commonly found in developing countries, developed countries have also experienced several foodborne outbreaks. Contaminants may be inadvertently introduced to the foods by inadequate handling practices, either on the farm or during processing of foods. Protozoan parasites can be found worldwide, either infecting wild animals or in water and contaminating crops grown for human consumption. The disease can be much more severe and prolonged in immunocompromissed individuals.cite book |author=Ortega Y|year=2005|chapter=Food-and Waterborne Protozoan Parasites|title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Molds produce mycotoxins, which are secondary metabolites that can cause acute or chronic diseases in humans when ingested from contaminated foods. Potential diseases include cancers and tumors in different organs (heart, liver, kidney, nerves), gastrointestinal disturbances, alteration of the immune system, and reproductive problems. Species of " Aspergillus", " Fusarium", " Penicillium", and " Claviceps" grow in agricultural commodities or foods and produce the mycotoxins such as aflatoxins, deoxynivalenol, ochratoxin A, fumonisins, ergot alkaloids, T-2 toxin, and zearalenone and other minor mycotoxins such as cyclopiazonic acid and patulin. Mycotoxins occur mainly in cereal grains (barley, maize, rye, wheat), coffee, dairy products, fruits, nuts and spices. Control of mycotoxins in foods has focused on minimizing mycotoxin production in the field, during storage or destruction once produced. Monitoring foods for mycotoxins is important to manage strategies such as regulations and guidelines, which are used by 77 countries, and for developing exposure assessments essential for accurate risk characterization.cite book |author=Cousin et al|year=2005|chapter=Foodborne Mycotoxins: Chemistry, Biology, Ecology, and Toxicology |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Yersinia enterocolitica" includes pathogens and environmental strains that are ubiquitous in terrestrial and fresh water ecosystems. Evidence from large outbreaks of yersiniosis and from epidemiological studies of sporadic cases has shown that "Y. enterocolitica" is a foodborne pathogen. Pork is often implicated as the source of infection. The pig is the only animal consumed by man that regularly harbours pathogenic "Y. enterocolitica". An important property of the bacterium is its ability to multiply at temperatures near to 0°C, and therefore in many chilled foods. The pathogenic serovars (mainly O:3, O:5,27, O:8 and O:9) show different geographical distribution. However, the appearance of strains of serovars O:3 and O:9 in Europe, Japan in the 1970s, and in North America by the end of the 1980s, is an example of a global pandemic. There is a possible risk of reactive arthritis following infection with "Y. enterocolitica".cite book |author=Nesbakken T|year=2005|chapter=Yersinia enterocolitica |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Vibrio" species are prevalent in estuarine and marine environments and seven species can cause foodborne infections associated with seafood. "Vibrio cholerae" O1 and O139 serovtypes produce cholera toxin and are agents of cholera. However, fecal-oral route infections in the terrestrial environment are responsible for epidemic cholera. "V. cholerae" non-O1/O139 strains may cause gastroenteritis through production of known toxins or unknown mechanism. "Vibrio parahaemolytitucs" strains capable of producing thermostable direct hemolysin (TDH) and/or TDH-related hemolysin are most important cause of gastroenteritis associated with seafood consumption. "Vibrio vulnificus" is responsible for seafoodborne primary septicemia and its infectivity depends primarily on the risk factors of the host. "V. vulnificus" infection has the highest case fatality rate (50%) of any foodborne pathogen. Four other species ("Vibrio mimicus", "Vibrio hollisae", "Vibrio fluvialis", and "Vibrio furnissii") can cause gastroenteritis. Some strains of these species produce known toxins but the pathogenic mechanism is largely not understood. The ecology of and detection and control methods for all seafoodborne "Vibrio" pathogens are essentially similar.cite book |author=Nishibuchi M|year=2005|chapter=Vibrio spp.|title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Staphylococcus aureus" is a common cause of bacterial foodborne disease worldwide. Symptoms include vomiting and diarrhea that occur shortly after ingestion of "S. aureus"-contaminated food. The symptoms arise from ingestion of preformed enterotoxin, which accounts for the short incubation time. Staphylococcal enterotoxins are superantigens and, as such, have adverse effects on the immune system. The enterotoxin genes are accessory genetic elements in "S. aureus", meaning that not all strains of this organism are enterotoxin-producing. The enterotoxin genes are found on prophage, plasmids, and pathogenicity islands in different strains of "S. aureus". Expression of the enterotoxin genes is often under the control of global virulence gene regulatory systems.cite book |author=Stewart GC|year=2005|chapter=Staphylococcus aureus |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Campylobacter" spp., primarily "C. jejuni" subsp. "jejuni" is one of the major causes of bacterial gastroenteritisin the U.S. and worldwide. "Campylobacter" infection is primarily a foodborne illness, usually without complications; however, serious sequelae such as Guillain-Barre Syndrome occur in a small subset of infected patients. Detection of "C. jejuni" in clinical samples is readily accomplished by culture and non-culture methods.cite book |author= Nachamkin I and Guerry P |year=2005|chapter=Campylobacter Infections |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Listeria monocytogenes" is Gram-positive foodborne bacterial pathogen and the causative agent of human listeriosis. "Listeriae" are acquired primarily through the consumption of contaminated foods including soft cheese, raw milk, deli salads, and ready-to-eat foods such as luncheon meats and frankfurters. Although "L. monocytogenes" infection is usually limited to individuals that are immunocompromised, the high mortality rate associated with human listeriosis makes "L. monocytogenes" the leading cause of death amongst foodborne bacterial pathogens. As a result, tremendous effort has been made at developing methods for the isolation, detection and control of "L. monocytogenes" in foods.cite book |author=Paoli et al|year=2005|chapter=Listeria monocytogenes |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
"Salmonella" serotypes continue to be a prominent threat to food safety worldwide. Infections are commonly acquired by animal to human transmission though consumption of undercooked food products derived from livestock or domestic fowl. The second half of the 20th century saw the emergence of "Salmonella" serotypes that became associated with new food sources (i.e. chicken eggs) and the emergence of "Salmonella" serotypes with resistance against multiple antibiotics.cite book |author=Andrews et al|year=2005|chapter=Salmonella spp. |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Shigella" species are members of the family " Enterobacteriaceae" and are Gram negative, non-motile rods. Four subgroups exist based on O- antigenstructure and biochemical properties; "S. dysenteriae" (subgroup A), "S. flexneri" (subgroup B), "S. boydii" (subgroup C) and "S. sonnei" (subgroup D). Symptoms include mild to severe diarrheawith or without blood, fever, tenesmus, and abdominal pain. Further complications of the disease may be seizures, toxic megacolon, reactive arthritisand hemolytic uremic syndrome. Transmission of the pathogen is by the fecal-oral route, commonly through food and water. The infectious dose ranges from 10-100 organisms. "Shigella" spp. have a sophisticated pathogenic mechanism to invade colonic epithelial cells of the host, man and higher primates, and the ability to multiply intracellularly and spread from cell to adjacent cell via actin polymerization. "Shigellae" are one of the leading causes of bacterial foodborne illnesses and can spread quickly within a population.cite book |author=Lampel KA|year=2005|chapter=Shigella spp. |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
More information is available concerning "
Escherichia coli" than any other organism, thus making "E. coli" the most thoroughly studied species in the microbial world. For many years, "E. coli" was considered a commensal of human and animal intestinal tracts with low virulence potential. It is now known that many strains of "E. coli" act as pathogens inducing serious gastrointestinal diseases and even death in humans. There are six major categories of "E. coli" strains that cause enteric diseases in humans including the (1) enterohemorrhagic "E. coli", which cause hemorrhagic colitis and hemolytic uremic syndrome, (2) enterotoxigenic " E. coli", which induce traveler's diarrhea, (3) enteropathogenic "E. coli", which cause a persistent diarrhea in children living in developing countries, (4) enteroaggregative "E. coli", which provoke diarrhea in children, (5) enteroinvasive "E. coli" that are biochemically and genetically related to "Shigella" species and can induce diarrhea, and (6) diffusely adherent "E. coli", which cause diarrhea and are distinguished by a characteristic type of adherence to mammalian cells.cite book |author=Smith and Fratamico|year=2005|chapter=Diarrhea-inducing Escherichia coli |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
"Clostridium botulinum" and "Clostridium perfringens"
Clostridium botulinum" produces extremely potent neurotoxins that result in the severe neuroparalytic disease, botulism. The enterotoxin produced by " C. perfringens" during sporulation of vegetative cells in the host intestine results in debilitating acute diarrhea and abdominal pain. Sales of refrigerated, processed foods of extended durability including sous-vide foods, chilled ready-to-eat meals, and cook-chill foods have increased over recent years. Anaerobic spore-formers have been identified as the primary microbiological concerns in these foods. Heightened awareness over intentional food source tampering with botulinum neurotoxin has arisen with respect to genes encoding the toxins that are capable of transfer to nontoxigenic clostridia.cite book |author=Novak et al|year=2005|chapter=Clostridium botulinum and Clostridium perfringens |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
Bacillus cereus" group comprises six members: "B. anthracis", "B. cereus", "B. mycoides", "B. pseudomycoides", "B. thuringiensis" and "B. weihenstephanensis". These species are closely related and should be placed within one species, except for "B. anthracis" that possesses specific large virulence plasmids. "B. cereus" is a normal soil inhabitant and is frequently isolated from a variety of foods, including vegetables, dairy products and meat. It causes a vomiting or diarrhoeaillness that is becoming increasingly important in the industrialized world. Some patients may experience both types of illness simultaneously. The diarrhoeal type of illness is most prevalent in the western hemisphere, whereas the emetic type is most prevalent in Japan. Desserts, meat dishes, and dairy products are the foods most frequently associated with diarrhoeal illness, whereas rice and pasta are the most common vehicles of emetic illness. The emetic toxin (cereulide) has been isolated and characterized; it is a small ring peptide synthesised non-ribosomally by a peptide synthetase. Three types of "B. cereus" enterotoxins involved in foodborne outbreaks have been identified. Two of these enterotoxins are three-component proteins and are related, while the last is a one-component protein (CytK). Deaths have been recorded both by strains that produce the emetic toxin and by a strain producing only CytK. Some strains of the "B. cereus" group are able to grow at refrigeration temperatures. These variants raise concern about the safety of cooked, refrigerated foods with an extended shelf life. "B. cereus" spores adhere to many surfaces and survive normal washing and disinfection (except for hypochloriteand UVC) procedures. "B. cereus" foodborne illness is likely underreported because of its relatively mild symptoms, which are of short duration.cite book |author=Granum PE|year=2005|chapter=Bacillus cereus |title=Foodborne Pathogens: Microbiology and Molecular Biology|publisher=Caister Academic Press|id= ISBN 978-1-904455-00-4]
It is important to be able to detect microorganisms in food, in particular pathogenic microorganisms or genetically modified microorganisms.
Real-time PCRis an accepted analytical tool within the food industry. Its principal role has been one of assisting the legislative authorities, major manufacturers and retailers to confirm the authenticity of foods. The most obvious role is the detection of genetically modified organisms, but real-time PCR makes a significant contribution to other areas of the food industry, including food safety.cite book |author= Wiseman G|year=2009|chapter=Real-Time PCR: Application to Food Authenticity and Legislation|title=Real-Time PCR: Current Technology and Applications|publisher=Caister Academic Press|id= ISBN 978-1-904455-39-4]
* [http://www.ift.org/divisions/food_micro/ Institute of Food Technologists Food Microbiology Division]
* [http://www.arrowscientific.com.au/glossary/definitions-of-words-used-in-food-microbiology.html Food Microbiology Glossary]
* [http://www.horizonpress.com/gateway/micro.html Microbiology]
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