MAFFT

MAFFT

MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences.

MAFFT is freely available for academic use, without any warranty.

See also

* Sequence alignment software
* Clustal

References

* Katoh K, Kuma K, Toh H, Miyata T (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. "Nucleic Acids Res, 33:511-518". (note: describes [ancestral versions of] the G-INS-i, L-INS-i and E-INS-i strategies.)
* Katoh K, Misawa K, Kuma K, Miyata T (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. "Nucleic Acids Res, 30:3059-3066". (note: describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies.)

External links

* [http://align.bmr.kyushu-u.ac.jp/mafft/software/ Official website]
* [http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ MAFFT Online Server]
* [http://www.ebi.ac.uk/mafft/ MAFFT server] at EBI
* [http://align.genome.jp/mafft/ ClustalW / MAFFT / PRRN] at GenomeNet
* [http://myhits.isb-sib.ch/cgi-bin/index ClustalW / TCoffee / MAFFT] in MyHits, SIB


Wikimedia Foundation. 2010.

Игры ⚽ Нужно сделать НИР?

Look at other dictionaries:

  • Clustal — Developer(s) Gibson T. (EMBL), Thompson J. (CNRS), Higgins D. (UCD) Stable release 2.1 / 17 November 2010; 11 months ago (2010 11 17) Written in C++ …   Wikipedia

  • Multiple sequence alignment — A multiple sequence alignment (MSA) is a sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the input set of query sequences are assumed to have an evolutionary relationship by which they… …   Wikipedia

  • Sequenzalignment — Ein Alignment (englisch: Abgleich, Anordnung, Ausrichtung), im Deutschen oft auch Alignierung oder Alinierung genannt, dient dem Vergleich zweier oder mehrerer Strings (technischer Begriff für Zeichenfolge, Sequenz) und wird besonders häufig in… …   Deutsch Wikipedia

  • Microbial phylogenetics — is the study of the evolutionary relatedness among various groups of microorganisms. The molecular approach to microbial phylogenetic analysis, pioneered by Carl Woese in the 1970s and leading to the three domain model (Archaea, Bacteria,… …   Wikipedia

  • MUSCLE (alignment software) — For the toy, see M.U.S.C.L.E.. MUSCLE (multiple sequence comparison by log expectation) is public domain, multiple sequence alignment software for protein and nucleotide sequences.[1][2] MUSCLE is often used as a replacement for Clustal, since it …   Wikipedia

  • T-Coffee — Dieser Artikel wurde aufgrund von inhaltlichen Mängeln auf der Qualitätssicherungsseite der Redaktion Informatik eingetragen. Dies geschieht, um die Qualität der Artikel aus dem Themengebiet Informatik auf ein akzeptables Niveau zu bringen. Hilf… …   Deutsch Wikipedia

  • UGENE — UGENE …   Википедия

Share the article and excerpts

Direct link
… Do a right-click on the link above
and select “Copy Link”