MAFFT

MAFFT

MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences.

MAFFT is freely available for academic use, without any warranty.

See also

* Sequence alignment software
* Clustal

References

* Katoh K, Kuma K, Toh H, Miyata T (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. "Nucleic Acids Res, 33:511-518". (note: describes [ancestral versions of] the G-INS-i, L-INS-i and E-INS-i strategies.)
* Katoh K, Misawa K, Kuma K, Miyata T (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. "Nucleic Acids Res, 30:3059-3066". (note: describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies.)

External links

* [http://align.bmr.kyushu-u.ac.jp/mafft/software/ Official website]
* [http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ MAFFT Online Server]
* [http://www.ebi.ac.uk/mafft/ MAFFT server] at EBI
* [http://align.genome.jp/mafft/ ClustalW / MAFFT / PRRN] at GenomeNet
* [http://myhits.isb-sib.ch/cgi-bin/index ClustalW / TCoffee / MAFFT] in MyHits, SIB


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