Insilicos

Insilicos

Infobox Company
name = Insilicos

type =
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foundation = 2002
founder = Erik Nilsson, Brian Pratt and Bryan Prazen
location_city = Seattle, WA
location_country = United States
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industry = Software, Life science
products = Insilicos Proteomics Pipeline InsilicosViewer
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homepage = http://www.insilicos.com
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Insilicos is a life science software company founded in 2002 by Erik Nilsson, Brian Pratt and Bryan Prazen. Insilicos develops scientific computing software to provide software for disease diagnoses.

Technology

Insilicos' key technologies includes pattern recognition techniques to interpret proteomics mass spectrometry data. Insilicos products include InsilicosViewer and Insilicos Proteomics Pipeline (IPP). These products support the mzXML, mzDATA and mzML file formats.cite journal | title=A Common Open Representation of Mass Spectrometry Data and its Application to Proteomics Research| journal=Nature Biotechnology| year=2004| volume=22| url=http://www.nature.com/nbt/journal/v22/n11/fig_tab/nbt1031_F4.html| pages=1459–1466 | doi=10.1038/nbt1031 | author=Pedrioli, Patrick G A] In 2007, Insilicos received a grant from the National Human Genome Research Institute to further develop software allowing for studies to be conducted more quickly.Cite web|url=http://blog.seattlepi.nwsource.com/venture/archives/120910.asp|title=Insilicos Works with Amazon, ISB on Biotech Service|accessdate=2008-03-05|year=2007-08-30|author=John Cook|work=Seattle Post-Intelligencer] The open-source software, developed in connection with the Institute for Systems Biology, has been referred to as the Trans Proteomic Pipeline.Cite web|url=http://seattlepi.nwsource.com/business/329779_tbrfs31.html|title=Insilicos Gets $1 Million Grant for Software Project|accessdate=2008-03-05|year=2007-08-30|work=Seattle Post-Intelligencer] IPP is commercial version of the Trans-Proteomic Pipeline

References


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  • Mass spectrometry data formats — Here the main mass spectrometry data formats are listed.mzXMLmzXML is a XML (eXtensible Markup Language) based common file format for proteomics mass spectrometric data.cite journal |author=Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW,… …   Wikipedia

  • Trans-Proteomic Pipeline — The Trans Proteomic Pipeline (TPP) is a widely used freely available open source proteomics data analysis pipeline developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle Proteome Center. The TPP… …   Wikipedia

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