Collinsella-1 RNA motif

Collinsella-1 RNA
Consensus secondary structure of Collinsella-1 RNAs
Identifiers
Symbol	Collinsella-1
Rfam	RF01700
Other data
RNA type	sRNA

The Collinsella-1 RNA motif denotes a particular conserved RNA structure discovered by bioinformatics.^[1] Of the six sequences belonging to this motif that were originally identified, five are from uncultivated bacteria residing in the human gut, while only the sixth is in a cultivated species, Collinsella aerofaciens. The evidence supporting the stem-loops designated as "P1" and "P2" is ambiguous.

See also

• Acido-Lenti-1 RNA motif
• Bacteroidales-1 RNA motif
• Chloroflexi-1 RNA motif
• Flavo-1 RNA motif

References

1. ^ Weinberg Z, Wang JX, Bogue J, et al. (March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome Biol 11 (3): R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2864571. 

External links

• Rfam page for Collinsella-1 RNA