K-mer

k-mers (or x-mers where "x" can be virtually any consonant of choice) usually refer to specific n-tuples or n-grams of nucleic acid or amino acid sequences that can be used to identify certain regions within biomolecules like DNA (e.g. for gene prediction) or proteins. Either k-mer strings as such can be used for finding regions of interest, or k-mer statistics giving discrete probability distributions of a number of possible k-mer combinations (or rather permutations with repetitions) are used. Specific short k-mers are called oligomers or "oligos" for short.

ee also

* polymer
* N-gram

Examples

*Dimer = AGAGAGAGAGAGAG
*Trimer = AAGAAGAAGAAG