- AMAP
AMAP is a
multiple sequence alignment program based on a new approach to multiple alignment calledsequence annealing . This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.The program can be used through the [http://baboon.math.berkeley.edu/mavid/ AMAP web server] or as a standalone program which can be installed with the [http://bio.math.berkeley.edu/amap/download/ source code] .
Input/Output
This program accepts sequences in
FASTA format .The output format includes:
FASTA format ,Clustal .References
A. Schwartz and L. Pachter, [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/2/e24 Multiple alignment by sequence annealing] , Bioinformatics 23, e24-e29 (2006).
External links
* [http://baboon.math.berkeley.edu/mavid/ AMAP web server]
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