- Bioclipse
Infobox Software
name = Bioclipse
caption =
developer = The Bioclipse Project
latest_release_version = 1.1.3
latest_release_date = November, 2007
operating_system =Cross-platform
genre =Cheminformatics /Bioinformatics
license =Eclipse Public License
website = [http://www.bioclipse.net/ www.bioclipse.net]The Bioclipse project is a Java-based, open source, visual platform for chemo- and
bioinformatics based on the Eclipse Rich Client Platform (RCP).Bioclipse uses, as any RCP application, a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system,
software updates , preferences,cross-platform deployment etc. Via these plugins, Bioclipse provides functionality for chemo- and bioinformatics, and extension points that easily can be extended by other, possibly proprietary, plugins to provide additional functionality.The first stable release of Bioclipse includes a
CDK plugin (bc_cdk) to provide a chemoinformatic backend, aJmol plugin (bc_jmol) for 3D-visualization, and aBioJava plugin (bc_biojava) for sequence analysis. Bioclipse is developed as a collaboration between the Proteochemometric Group , Dept. of Pharmaceutical Biosciences,Uppsala University , Sweden, and the Research Group for Molecular Informatics atCologne University Bioinformatics Center (CUBIC).External links
* [http://www.bioclipse.net/ www.bioclipse.net homepage]
* [http://sf.net/projects/bioclipse SourceForge project page]
* [http://wiki.bioclipse.net/ Wiki]References
* Ola Spjuth, Tobias Helmus, Egon L Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, P. Murray-Rust, Christoph Steinbeck, Jarl E.S. Wikberg
"Bioclipse: An open source workbench for chemo- and bioinformatics",
BMC Bioinformatics, 2007, "8". doi|10.1186/1471-2105-8-59
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