Darwin Core Archive

Darwin Core Archive

Darwin Core Archive (DwC-A) is a Biodiversity informatics data standard that makes use of the Darwin Core terms to produce a single, self contained dataset for species occurrence or checklist data. Essentially it is a set of text (CSV) files with a simple descriptor (meta.xml) to inform others how your files are organized. The format is defined in the Darwin Core Text Guidelines.[1] It is the preferred format for publishing data to the GBIF network.

Contents


Darwin Core

The Darwin Core standard has been used to mobilise the vast majority of specimen occurrence and observational records within the GBIF network.[2] The Darwin Core standard was originally conceived to facilitate the discovery, retrieval, and integration of information about modern biological specimens, their spatio-temporal occurrence, and their supporting evidence housed in collections (physical or digital).

The Darwin Core today is broader in scope. It aims to provide a stable, standard reference for sharing information on biological diversity. As a glossary of terms, the Darwin Core provides stable semantic definitions with the goal of being maximally reusable in a variety of contexts. This means that Darwin Core may still be used in the same way it has historically been used, but may also serve as the basis for building more complex exchange formats, while still ensuring interoperability through a common set of terms.

Archive Format

The central idea of an archive is that its data files are logically arranged in a star-like manner, with one core data file surrounded by any number of ’extensions’. Each extension record (or ‘extension file row’) points to a record in the core file; in this way, many extension records can exist for each single core record.

Details about recommended extensions can be found in their respective subsections and will be extensively documented in the GBIF registry, which will catalogue all available extensions.

Sharing entire datasets instead of using pageable web services like DiGIR and TAPIR allows much simpler and more efficient data transfer. For example, retrieving 260,000 records via TAPIR takes about nine hours, issuing 1,300 http requests to transfer 500 MB of XML-formatted data. The exact same dataset, encoded as DwC-A and zipped, becomes a 3 MB file. Therefore, GBIF highly recommends compressing an archive using ZIP or GZIP when generating a DwC-A.

An archive requires stable identifiers for core records, but not for extensions. For any kind of shared data it is therefore necessary to have some sort of local record identifiers. It’s good practice to maintain – with the original data – identifiers that are stable over time and are not being reused after the record is deleted. If you can, please provide globally unique identifiers instead of local ones.

Archive Descriptor

To be completed.

Data Files

To be completed.

Dataset Metadata

A Darwin Core Archive should contain a file containing metadata describing the whole dataset. The Ecological Metadata Language (EML) is the most common format for this, but simple Dublin Core files are being used to.

References

External links


Wikimedia Foundation. 2010.

Игры ⚽ Поможем написать реферат

Look at other dictionaries:

  • Darwin (operating system) — Darwin Company / developer Apple Inc. Programmed in C, C++ OS family Unix …   Wikipedia

  • Core Data — Developer(s) Apple Inc. Stable release 3.2.0 Operating syst …   Wikipedia

  • Core Audio — Developer(s) Apple Inc. Stable release 3.2.6 Operating system Mac OS X, iOS …   Wikipedia

  • Core Foundation — (also called CF) is a C application programming interface (API) in Mac OS X iOS, and is a mix of low level routines and wrapper functions. Apple releases most of it as an open source project called CFLite that can be used to write cross platform… …   Wikipedia

  • Core Image — Mac OS X graphics model Rendering QuickDraw • Core OpenGL Quartz 2D • Core Image Core Animation • …   Wikipedia

  • Core Video — Mac OS X graphics model Rendering QuickDraw • Core OpenGL Quartz 2D • Core Image Core Animation • Core Video ColorSync …   Wikipedia

  • Core OpenGL — Mac OS X graphics model Rendering QuickDraw • Core OpenGL Quartz 2D • Core Image Core Animation • Core Video ColorSync • QuickTime Compositing …   Wikipedia

  • Charles Darwin and the Tree of Life — Programme title card from UK broadcast Genre Nature documentary Presented by …   Wikipedia

  • Mobile operating system — A mobile operating system, also known as a mobile OS, mobile software platform or a handheld operating system, is the operating system that controls a mobile device or information appliance similar in principle to an operating system such as… …   Wikipedia

  • Mac OS X Public Beta — Part of the Mac OS X family A screenshot of Mac OS X Public Beta. Notice the Apple menu logo in the middle of the menu bar. Developer …   Wikipedia

Share the article and excerpts

Direct link
Do a right-click on the link above
and select “Copy Link”