UGENE

UGENE

Infobox Software
name = UGENE



developer = Unipro
latest_release_version = 1.2.0
latest_release_date = release date|2008|09|19
programming language = C++, QtScript
operating system = Cross-platform
language = English, Russian
genre = Bioinformatics toolkit
license = GPL
website = http://ugene.unipro.ru

UGENE is a free cross-platform bioinformatics software package.

Features

UGENE has modular structure and almost all its functionality comes within plugins. Internally UGENE is designed with support of parallelism to make profit from using multicore computers.

* View and analysis of annotated DNA or protein sequences
* Huge files support, native support of gzipped documents
* Chromatograms visualization
* Number of DNA plots supported
* Exact local sequence alignment with Smith-Waterman algorithm
* Search for ORFs
* Integrated support of search requests to NCBI databases
* Multiple sequence alignment with port of MUSCLE
* Easy-to-use search with HMM profiles using adopted HMMER package

See also

* Sequence alignment software
* Bioinformatics, Computational biology
* Free open source bioinformatics projects

External links

* [http://ugene.unipro.ru/ UGENE homepage]
* [http://ugene.unipro.ru/documentation.html UGENE documentation]

Other Software

* [http://www.csc.fi/english/research/sciences/bioscience/programs/ds Discovery Studio]
*Vector NTI
*Geneious
* [http://www.clcbio.com/main CLC Main Workbench]


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