3D-Jury

3D-Jury

3D-Jury is a metaserver that aggregates and compares models from various protein structure prediction servers. It takes in groups of predictions made by a collection of servers and assigns each pair a 3D-Jury score, based on structural similarity. The score is generated by counting the number of Cα atoms in the two predictions within 3.5 Å of each other after being superpositioned. To improve accuracy of the final model, users can select the prediction servers from which to aggregate results. [cite journal | title=3D-Jury: a simple approach to improve protein structure predictions | journal=Bioinformatics | author=Ginalski K et al | year=2003 | volume=19 | issue=8 | pages=1015-1018 | url=http://bioinformatics.oxfordjournals.org/cgi/reprint/19/8/1015 | doi=10.1093/bioinformatics/btg124]

The Robetta automatic protein structure prediction server incorporates 3D-Jury into its prediction pipeline. [cite journal | title=Prediction of CASP6 structures using automated Robetta protocols | author=Chivian D et al | year=2005 | journal=Proteins | volume=61 | issue=S7 | pages=157-166 | url=http://www3.interscience.wiley.com/cgi-bin/fulltext/112097083/HTMLSTART | doi=10.1002/prot.20733]

References

External links

[http://meta.bioinfo.pl/submit_wizard.pl BioInfoBank Meta Server] 3D-Jury web interface


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