SplitsTree

SplitsTree

SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of trees. According to its developers, SplitsTree uses published methods such as split decomposition neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks.

Infobox Software
name = SplitsTree



caption =
developer = Daniel Huson and David Bryant
latest release version = 4.10
latest release date = 2008
latest preview version =
latest preview date =
operating system = Windows, Linux, Mac OS X
platform =
genre = Bioinformatics
license = free use, but not open source
website = http://www.splitstree.org

References

* D. H. Huson and D. Bryant, Application of Phylogenetic Networks in Evolutionary Studies, Mol. Biol. Evol., 23(2):254-267, 2006 [http://mbe.oxfordjournals.org/cgi/reprint/msj030?ijkey=GvcBFw4QPIORzUE&keytype=ref]

External links

[http://evolution.genetics.washington.edu/phylip/software.html List of phylogeny software] , hosted at the University of Washington


Wikimedia Foundation. 2010.

Игры ⚽ Нужна курсовая?

Look at other dictionaries:

  • Phylogenetic network — A phylogenetic network is any graph used to visualize evolutionary relationships between species or organisms. It is employed when reticulate events such as hybridization, horizontal gene transfer, recombination, or gene duplication and loss are… …   Wikipedia

  • List of phylogenetics software — This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics, cladistics, and bioinformatics. Methods for estimating… …   Wikipedia

  • Quantitative comparative linguistics — is a branch of comparative linguistics that applies mathematical models to the problem of classifying language relatedness. This includes the use of computational phylogenetics and cladistics to define an optimal tree (or network) to represent a… …   Wikipedia

  • Phylogenetic tree — ptree redirects here. For Patricia tree, see Radix tree …   Wikipedia

  • Split (phylogenetics) — A split in phylogenetics is a bipartition of a set of taxa, and the smallest unit of information in unrooted phylogenetic trees: each edge of an unrooted phylogenetic tree represents one split, and the tree can be efficiently reconstructed from… …   Wikipedia

  • Dendroscope — Dendroscope: (a) circular cladogram, (b) radial phylogram, (c) rectangular phylogram, and (d) slanted cladogram. Image by Huson et al. Developer(s) Daniel Huson et al. Stable release …   Wikipedia

  • Биоинформатика — математические методы компьютерного анализа в сравнительной геномике (геномная биоинформатика). разработка алгоритмов и программ для предсказания пространственной структуры белков (структурная биоинформатика). исследование стратегий,… …   Википедия

Share the article and excerpts

Direct link
Do a right-click on the link above
and select “Copy Link”