GENSCAN

GENSCAN

GenScan is an online program to identify complete gene structures in genomic DNA. It is a GHMM-based gene finder for human sequences.The Web server at the MIT can be found at: http://genes.mit.edu/GENSCAN.html

GENSCAN was developed by Chris Burge in the research group of Samuel Karlin, Department of Mathematics, Stanford University.

An overview over similar software can be found at: http://www.genefinding.org/software.html

References

* Burge, C. and Karlin, S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94. PMID: 9149143.
* Burge, C. B. (1998) Modeling dependencies in pre-mRNA splicing signals. In Salzberg, S., Searls, D. and Kasif, S., eds. Computational Methods in Molecular Biology, Elsevier Science, Amsterdam, pp. 127-163.
* Burge, C. B. and Karlin, S. (1998) Finding the genes in genomic DNA. Curr. Opin. Struct. Biol. 8, 346-354. PMID: 9149143.


Wikimedia Foundation. 2010.

Игры ⚽ Поможем написать курсовую

Look at other dictionaries:

  • Gene prediction — Gene finding typically refers to the area of computational biology that is concerned with algorithmically identifying stretches of sequence, usually genomic DNA, that are biologically functional. This especially includes protein coding genes, but …   Wikipedia

  • Gen-Vorhersage — Unter Genvorhersage oder Annotation versteht man das a priori Auffinden von Genen innerhalb einer Nukleotidsequenz anhand von typischen Mustern wie beispielsweise Promotor, Start und Stopsignale von Introns. Dazu werden im Rahmen der… …   Deutsch Wikipedia

  • Genvorhersage — Unter Genvorhersage oder Annotation versteht man das A priori Auffinden von Genen innerhalb einer Nukleotidsequenz anhand von typischen Mustern wie beispielsweise Promotor, Start und Stopsignale von Introns. Dazu werden im Rahmen der… …   Deutsch Wikipedia

  • Predicción de genes — Saltar a navegación, búsqueda …   Wikipedia Español

  • Christopher Burge — Chris Burge Born May 26, 1968 (1968 05 26) (age 43)[1] Institutions …   Wikipedia

  • ORFeome — is the complete collection of open reading frames(ORF) that exists in the genome. ORFs are one of many different elements found in genomes, being part of the gene structure. The process of finding ORFs are done by computer programs such as… …   Wikipedia

  • Биоинформатика — * біяінфарматыка * bioinformatics новое направление исследований, использующее математические и алгоритмические методы для решения молекулярно биологических задач. Задачи Б. можно определить как развитие и использование математических и… …   Генетика. Энциклопедический словарь

Share the article and excerpts

Direct link
… Do a right-click on the link above
and select “Copy Link”