Yass (software)

Yass (software)

YASScite journal |author=Noe L., Kucherov. G.|title=YASS: enhancing the sensitivity of DNA similarity search |journal=Nucleic Acids Research |volume=33|issue=2 |pages=W540-W543 |year=2005 |doi=10.1093/nar/gki478 |pmid=15980530] cite journal |author=Noe L., Kucherov. G.|title=Improved hit criteria for DNA local alignment|journal=BMC Bioinformatics |volume=5|issue=149 |year=2004 |doi=10.1186/1471-2105-5-149 |pmid=15485572] is a public domain, pairwise sequence alignment software for nucleotide sequences. This program accepts sequences in FASTA format and the output format includes the BLAST tabular output. YASS uses several "transition-constrained" seeds that allow to considerably improve the sensitivity. The program can be used through the [http://bioinfo.lifl.fr/yass/yass.php YASS web server] or as a standalone program which can be installed with the [http://bioinfo.lifl.fr/yass/download.php source code] .

ee also

*Sequence alignment software
*BLAST
*FASTA
*JAligner

References

External links

* [http://bioinfo.lifl.fr/yass Official website]


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